Pseudomonas sp. URHB0015, N526_RS0124290
Cytoplasmic
Cytoplasmic Membrane
Periplasmic
Outer Membrane
Extracellular
Unknown
Sequence Data
| Strain | Pseudomonas sp. URHB0015 N526DRAFT_scaffold00004.4, whole genome shotgun sequence. [Details] | |
| DNA Sequence Upstream of Gene |
GGAGAGGGTTTGCGGCGCGCTGTCGGATCTGCCGGAGCGTACGCGGTATGCGTTTGAAATGTGCCGGATTCATGGGATGAAGCAGAATGAGATTGCGCGG ATTTTGGGCGTTTCGCCGGCGTTGGTGCATGGGATGATCAGTGAGGCGGTTTTGCATTGTCGGCGGCGGGTGCTTTGAGGGGGTGGGGTTGGTTGAGATC AGCGACATGGAATGATGCCGAAGGTCCCCTGCCCCATAGACCCAACCCCACCGCAACGAACCCATCCATTTCAACCCTCCATGGGAAAGGTGATAAGGAG TAGTCCACCTCCCCCACAAGCACAGTCAAATCTGACAGCGGATTATTCCAGCATTGTAGGACCATTCTTGATTTCACCCACCCTGTAGATGAACCAAACC TTGGCTGCCTATAGTTGTGCCCGGATTGAAATGGAGAATGGCGCCCTGACGCCCCTCCTCCTTTTCTTCGCGCGAAAAACTCGAACAACAAGGAGGTTCC
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| DNA Sequence for Gene |
>N526_RS0124290
ATGCCCCGCCAAAGCGACCTGCGTTTCACTTTCGAGCCCTTGCAGGTCGACGTCTTCGACGTGGTCTCGTTCACCCTCGATGAAGGCCTGTCCCGCCCCT TCAAGCTCACCTTGGAGCTGGCCAGTCACAACGCCGCCATCGACTTCAATCGCGTGCTCGACCTGGCGGGGCTGTTCACGATTTGGCGGGGCGACACGCC GGTTCGGCATGTCCACGGTCTGGTCAGTCTGTTCACCCAAGGCGACACAGGTTTTCGCCGCACCCGCTACAGTGCCATCGTCGAACCGACCCTGGCGCGC TTCGACCTGCGCTCCAACTGGCGAATTTTCCAGAGCCTGACCGTACCCGAGATCATCACCCGCGTACTCGCCGACCAACAGTTGACCGACATCCGCAGCG AAATCTGTTTCGACCACCAGCCCCGCGAATACTGCGTGCAGGCCGGCGAAACCGACCTCGATTTCATCGCCCGCCTCGCCGCTGAGGAAGGTCTGCTCTA CAGCTTCGAACACCGTGTCGACGGCCACACCCTGATCCTCACCGACCGCGTCGGCGGCCTCGGCACCATCGGCACCCACACCGATTGTCCGGTGATCTAC CAGCCAATGGCCGGCGGCGATTCCATGGAACCGGCGCTGACCCGCTTCCACTACACCGAACAAGTGCGCACCGCCGCGCAGGTGCAGCGCGATTACCGCT TCACCCATCCGCGCTACAACCAACAGCACACCGCCACCGGCAATCAGGACCTGAACCACCAGCACAAGGACTACGAGCGCTACGACTACCCCGGCCGCTA CAAGCGCGACGTCGCCGGCAAACCCTTCACCAAAACCCGCCTGACCGCGCTGCGCAACGACGCCAAATTGGCCCACCTGAGCGGCGACGATGCGCGTCTG CAACCGGGCCTGGCCTTCGACCTCAACGAGCATCCGCGCGAAGACTTCAACGACCGCTGGCGCACCATCGCCATCACCCACCAAGGCAAACAACACAGCA GCCTCGAAGAAGAAGCCTTCGGCAGCGACAGCAGCGCTTCCTATGAAATGACCGCCAGCGCCATCCGCTGGACCTCCGACTGGAAAGCCCCGCTACGCGC CAAACCCTGCATCGACGGCCCACAGATCGCCAGCGTGGTCGGTCCGCCAGGCGAAGAGATTTATTGCGATGAATGGGGCCGGGTCAAAGTGCAGTTCCCT TGGGATCGCACGGACAAAAACAACGACCAGAGTTCCTGCTGGATTCGCGTGGCGCAAGGCTGGGCCGGCGCAACCTGGGGCGCCATGGCCATCCCACGGG TCGGCCAGGAACTGATCATCAGCTACCTCGATGGCGACCCCGACCAACCCATCGCCACCGGCCGCGCCTACCGCGAGACCAACCTACCGCCCTACGAACT GCCCAAGCACAAGACGCGGATGACCATCAAAAGCCGGACCCATAAGGGCGACGGATTTAATGAGCTGCGGTTTGAGGATGAGTTGGGGCAGCAGGAGGTT TTCATCCATGCCGAAAAGGACAAGAACGTCCACGTCAAAAACAACAACGGCATCTTCGTCGGCAATGACAGAAAAGAACAAGTGGGTAACGACGAGCAGG TCTCGATCGGCCACAACCAGTCCCATTCGATAGGCCAGGATCGTGACATCAGCGTTGGGCGGGATCTTAAAACCAGCGTGGAACGCGACCGCTGGGAACG CGTAGGCAATGATCGGTACGACTCCACAACAGCCAATCACCGAAGCCAGGTCGGCGGTCACAGCGAGCACAGTATCAAGGGGCAACATAGCCTGACCGCG GGTCAAGGTATTCAGCTGACAACGACCCTTTATAACTTGCAAGCTCATGAACGAATCGTCTTTCAAGGTCCCGGCGGCAGCATCACGCTCGACGCTGACG GCATTCACCTCAACGGCATTGCCATCACCATCAAGGGGCCAGTGACGGCAACCGCATCAGGCAGCGGCCAACCATTTTCCCTGCAACTGGCACCCGAGTC GGGAAAGACCTGCGTGGAGAAAAATAAATGA
BLASTN Search
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DIAMOND BLASTX Search (DIAMOND is faster than BLASTX)
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| DNA Sequence Downstream of Gene |
CGCCCGCTATCGTTCAAGCCTTTGCGGCCGAGGAGCATGAACCCGATGCCACGCTGTATTTGTTACTCGACCCTTTGGCCGACTGCGCCAAAGATGATCC ACTACACATCGAGACGCTGCCTCAAACACTGGGCAACGATGCCGTCACGCCCCTGTGCCGGCCTGATCTGACTCATGTGCCATCAGCCTGCCCAGTGCTG GTGACCCTCGCCACTCCTGGTGTCTTGCCGTCGCCACAATTACTCGAGAAGTCTGCCTTACGCGCACACAAGGATCTGGATCGCCATAAACGCTATGTGT GCGGCTGGCTCAGCAGCCATGCTTCAGCCCAGCACTTGAGTGCCCACATCATCTCGATTGGACATCTTCCCTCAGAGCAAGGGCGAGTGTGTTTTCCGAT CCATGAACCCCTTCGCCTGGAGCTGCTTGCGGGTAGCTTGCGCTACAACGATGAAGCTCCCTGGTGGCCGACCCGGCGTTGGTTGTTGCCCACCAGCAGC
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| Amino Acid Sequence |
>type VI secretion protein VgrG
MPRQSDLRFTFEPLQVDVFDVVSFTLDEGLSRPFKLTLELASHNAAIDFNRVLDLAGLFTIWRGDTPVRHVHGLVSLFTQGDTGFRRTRYSAIVEPTLAR FDLRSNWRIFQSLTVPEIITRVLADQQLTDIRSEICFDHQPREYCVQAGETDLDFIARLAAEEGLLYSFEHRVDGHTLILTDRVGGLGTIGTHTDCPVIY QPMAGGDSMEPALTRFHYTEQVRTAAQVQRDYRFTHPRYNQQHTATGNQDLNHQHKDYERYDYPGRYKRDVAGKPFTKTRLTALRNDAKLAHLSGDDARL QPGLAFDLNEHPREDFNDRWRTIAITHQGKQHSSLEEEAFGSDSSASYEMTASAIRWTSDWKAPLRAKPCIDGPQIASVVGPPGEEIYCDEWGRVKVQFP WDRTDKNNDQSSCWIRVAQGWAGATWGAMAIPRVGQELIISYLDGDPDQPIATGRAYRETNLPPYELPKHKTRMTIKSRTHKGDGFNELRFEDELGQQEV FIHAEKDKNVHVKNNNGIFVGNDRKEQVGNDEQVSIGHNQSHSIGQDRDISVGRDLKTSVERDRWERVGNDRYDSTTANHRSQVGGHSEHSIKGQHSLTA GQGIQLTTTLYNLQAHERIVFQGPGGSITLDADGIHLNGIAITIKGPVTATASGSGQPFSLQLAPESGKTCVEKNK
BLASTP |
DIAMOND BLASTP (DIAMOND is faster than BLASTP)
Search for conserved domains in this protein at NCBI CDD site
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