Pseudomonas sp. URHB0015, N526_RS0116505
Cytoplasmic
Cytoplasmic Membrane
Periplasmic
Outer Membrane
Extracellular
Unknown
Sequence Data
| Strain | Pseudomonas sp. URHB0015 N526DRAFT_scaffold00014.14_C, whole genome shotgun sequence. [Details] | |
| DNA Sequence Upstream of Gene |
TACATTCCTCATCGCGACCCTCACCGTTGAGCTAAGTCGCGGATGTTCAACGAGATTTCATCTGGTTGTAAAAAATACGCGCGCACAAAAAAGGCCACTC TTTCGAGTAGCCTTTTTTGATGTTTGGTTGCGGGAGCCGGATTTGAACCGACGACCTTCGGGTTATGAGCCCGACGAGCTACCAGACTGCTCCATCCCGC GTCTGTGTGTCGGCATTCTACAGAGGAAAGCGTGAGTGTCAACTGCTTATTGCGAAAAATCTGTTCCTGTTCAATCAGTTAGCACTCTATCGTGGATCAC CATCAGGGCTGCAGGGCTTGCCACGTAAGGCTTTCAGCTCTATCGAAGGTGAAATCCCGATTAATAAAATAAATTTCAAGACAGGTCATTCAGGCGCTTT GTAGAAACCTGAAAAGCACTGGTGCTATATACAGGTGTGAGTGAGATACTGACAGTCCGACGGTTGAAAGTCCTTTTTCCTTCATCGAACACCGCCTTAT
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| DNA Sequence for Gene |
>N526_RS0116505
ATGACGCAACGCAAAATCATCCACGTCGACTGCGACTGTTTTTATGCCGCCATCGAGATGCGTGACGATCCGACGCTCGCCAGCAAACCACTGGCGGTGG GCGGGTCGGCGGACCGGCGTGGGGTGATTGCAACCTGCAACTATGAGGCGAGAGCTTATGGCGTGCGGTCGGCTATGTCATCGCGTCACGCGCTTAAGCT GTGCCCGGACCTGGTAATCGTCAAGCCGCGGATGGACGCTTATCGTGAAGCGTCAAAGGAAATCCAGGGGATCTTTCGCGACTACACCGATCTCATCGAG CCGTTGTCGCTGGATGAGGCTTACCTTGATGTGTCAGAAAGCAGTCATTTCAACGGCAGCGCCACGCGTATTGCCCAGGATATCCGACGCCGGGTCTCCA ATCAGTTGCACATCACCGTCTCGGCGGGCGTGGCGCCTAACAAATTCCTGGCGAAGATCGCCAGTGACTGGAAGAAACCCAATGGTTTGTACGTGATCAC GCCGGATCAGGTCGAAGATTTCGTCTCGCATTTGCCCGTCAGCAAGCTGCACGGTGTGGGCAAGGTCACGGCGGACAAACTGTCACGGCTGGGAATTGCC GATTGTTTGCAACTGCGCGACTGGAGCAAGTTGGCGTTGGTGCGCGAATTCGGCAGCTTCGGCGAGCGTTTATGGGGCCTGGCCCGTGGGATAGATGAGC GGCAGGTACAAAACGACAGCCGACGTCAATCAATCAGTGTGGAGAATACCTACGATGTCGATCTGCCCGATCTGGTCAGTTGCCTCGATAAGCTGCCCGA GCTACTGGAGACTCTGAACGGTCGCATGGCGCGTATCGACAGCAGTTATCGTCCGGGGAAACCCTTCGTCAAAGTGAAATTCCATGACTTTACCCAGACC ACACTTGAGCAGGCCGGGGCGGGTCGGGATTTGGGCAGCTATCAACTGTTGCTGACGCAGGCGTTCAATCGGGGCGGCAAGCCAGTGCGATTGCTGGGGA TTGGGGTGCGCTTGCAGGATTTGCGCGGCGGGTTTGAACAGTTGGATCTGTTCAGCCGTTAG
BLASTN Search
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DIAMOND BLASTX Search (DIAMOND is faster than BLASTX)
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| DNA Sequence Downstream of Gene |
TCGGGCGGCAAGGCCTCGCGCCCGCAGGCACGAGGTTTCAGAGACTCAATTGACGCCAGGGTCCGCTACCAGGCGTCCGGCATCCCTGGTCAGCGACTTG AGGAATTCACTCTGCAACTCGGGATCGTTGCGGGTCAATTCGATCAGGCTCTGTTCCAGTTCGCTGGCTTCTTCCTCCAGGCCCAGCTCCGATAGGCGCT TGACCCGATGCACCCATTGGCTCACTTCGTCATCTTCGAGGTCGTCGTAGATCAGTTCGTGGGCTTCCAGCAACTTGCCGCGCAGGCCGCTGCTGATGGC CAGGGACGAGTCAACGTGAACGTCGTCCTGGGCGTCGGCAACGCTGATCTGCAATTTGCTGAGGCGGCTCAGGTCATGCTCGGAAAACGGGCTGTCGAGC AGGTTCAGGCGTAACACACCATTACGATCTGTGGTCAGCTCGAAGGTCTGCTTACCGGTCTTGACTTCGACCGGACGCTCGCTCCAGGGCAGGCTCGAGT
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| Amino Acid Sequence |
>DNA polymerase IV
MTQRKIIHVDCDCFYAAIEMRDDPTLASKPLAVGGSADRRGVIATCNYEARAYGVRSAMSSRHALKLCPDLVIVKPRMDAYREASKEIQGIFRDYTDLIE PLSLDEAYLDVSESSHFNGSATRIAQDIRRRVSNQLHITVSAGVAPNKFLAKIASDWKKPNGLYVITPDQVEDFVSHLPVSKLHGVGKVTADKLSRLGIA DCLQLRDWSKLALVREFGSFGERLWGLARGIDERQVQNDSRRQSISVENTYDVDLPDLVSCLDKLPELLETLNGRMARIDSSYRPGKPFVKVKFHDFTQT TLEQAGAGRDLGSYQLLLTQAFNRGGKPVRLLGIGVRLQDLRGGFEQLDLFSR
BLASTP |
DIAMOND BLASTP (DIAMOND is faster than BLASTP)
Search for conserved domains in this protein at NCBI CDD site
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