Pseudomonas sp. URHB0015, N526_RS0115885
Cytoplasmic
Cytoplasmic Membrane
Periplasmic
Outer Membrane
Extracellular
Unknown
Sequence Data
| Strain | Pseudomonas sp. URHB0015 N526DRAFT_scaffold00013.13_C, whole genome shotgun sequence. [Details] | |
| DNA Sequence Upstream of Gene |
CGGTGCCGTGGCGCTCAATCTAAAGGACGAAGCCGCTCTTGACGCCGCTCTGACAAAGATGACCGCCAGTATCAAAGCCTACGCGCCTGACGTGGCGGTC GAGCATCTGCTGCTGGAACCGATGGCCCAGCCACCGCTGGCCGAGCTGATTGTCGGGATCAAGCGCGAGAGCGATTTCGCCCTGGCCCTGGTGATCGGCA CCGGCGGCGTGCTGGTCGAGTTGCTCAAGGACAGCCGCTGCCTGTTGCTGCCAACCACCGACGGCGCGATCCGCAACGCGCTGCTGAGTCTGCGCAGCGC CGCCTTGCTGCAAGGCTTTCGCGGCCGTGAAGCAGCGGACCTCGACAGTCTGGTCGCGGCAATTCGCGCGGTCGCCGACTACGCCTGCGAAAACGCCGGG CAACTGCTGGAACTCGATGTGAACCCATTGTTGGTCGGCGCCGCTGGCACGACTGCGGTCGACGCGTTGATTCGCCTCGGCCATGCGTGAGGAACAGAAC
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| DNA Sequence for Gene |
>N526_RS0115885
ATGCAACAGACATCCTTGACCGGCGGCCAGGCCCTGGTGCGCCTGCTGGCTAATTATGGGGTCGACACCGTCTTCGGTATTCCCGGGGTGCACACCCTGG AGCTGTATCGCGGGTTGCCCGGCAGCGGCATTCGCCACGTCCTGACCCGCCACGAGCAGGGCGCCAGTTTCATGGCTGACGGCTATGCGCGGGTCAGCGG CAAGCCGGGCGTGTGTTTCGTCATCACCGGTCCCGGCGTCACCAACGCCGCCACTGGGATCGGCCAAGCTTATGCCGACTCGATCCCGATGCTGGTGATT TCCAGCGTCAACCACACCGCCAGCCTCGGCAAGGGCTGGGGCATCCTCCACGAGTGCCAGGATCAGCGCGCCATGACCGCGCCTATCACTGCGTTTTCGG CGGTGGCCCTGACCGCCGAAGACCTGCCCGAATTGATCGCCCGCGCTTATGCGGTGTTCGACAGCGAGCGTCCGCGCCCGGTGCACATCTCCGTACCGCT GGACGTGTTGGCAGCACCGATCGCCCGCGACTGGAGCAACGAGGTCGTGCGTCGTCCCGGTCGCGGCACGCCAGCCGTCGCTGTGCTCGAACAGGCCGTC GCCAAACTGCAAAGCGCCAAACGGCCGATGATCATCGCCGGTGGCGGTGCCTTGAATGCCGCATCGCAACTGCAAGAACTCAGCACTCGATTGGCCGCGC CACTGTTCACCAGCGTCGCTGGCAAAGGCCTGCTGCCACCCGATGCGCCACTGAATGCCGGTTCGTCGCTGTGCGTGGAGCCGGGCTGGAAGCTGATCGC CGAAGCCGATGTGGTACTGGCGGTCGGCACCGAGATGGCCGACACCGATTTCTGGCGCGAGCGCCTGCCAGTCAATGGCGACGTGCTGCGGGTGGATATC GACCCGCGCAAGTTCAACGATTTCTACCCCTGTGCCGTGGCCTTGCACGGTGACGCCGGGCAAACCCTGTCTGCGTTGCTTGAGCGCCTGCCCGCGCAGG TGCGTGACGCCAGTGCGGCAATTGCCTCCGTGGCGGCATTGCGTGAAGCGGTAAAAAGCGGCCACGGTCCGTTGCAGTCGATCCATCAGGCGATCTTGCA ACGCATCGCCGCCGAGCTGCCGGACAACGCCTTTATCAGCACCGACATGACCCAACTGGCCTACACCGGTAACTACGCCTTTGATTCGCTGGCGCCGCGC AGTTGGTTACACCCGACCGGCTACGGCACCTTGGGCTACGGCCTGCCGGCCGGGATCGGCGCCAAGTTCGGCGCGCCCCAGCGTCCCGGGCTGGTGCTGG TGGGAGACGGCGGCTTCCTCTACACCGCGCAGGAACTGGCCACGGCAGTCGAGGAGCTGGACAGCCCGCTGGTGGTGCTGCTGTGGAACAACGACGCCCT GGGACAGATCCGCGACGACATGCTCGGCCTGGATATCGAGCCAATAGGCGTACTGCCACGCAACCCGGATTTCGCCGCGCTGGCCCGTGCCTTCGGTTGC ACCGTGAGCCAGCCACAAAGCCTGGCCGAACTGCAGACCGATCTGCGCCACGGCTTCAAGCGCAACGGCGTGACGCTGATCGAACTCAAGCACGCTTGTG CCCATTGA
BLASTN Search
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DIAMOND BLASTX Search (DIAMOND is faster than BLASTX)
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| DNA Sequence Downstream of Gene |
TCCGAGGAGGACACCCGCATGCGTTTTTCCGATCTGACCCAACGCATCGCCGGCGACGGCGCTGCCGCCTGGGACATTCACTACCGCGCCCTGGCCTTGC GCAGACAGGGCCAGGACATTTTGCTGCTGTCGGTGGGCGATCCAGACTTCGATACCCCACAGCCCATCGTCCAGGGCGCCATCGACAGTCTACTGGCCGG TAACACCCACTACGCCGATGTGCGCGGCAAGCCCGCCTTGCGTGCAGCCATCGCCCGCAGGCATCAGCAGCGCAGTGGCCAGGTGGTCTCGGCGGATCAG GTGACGGTACTGGCCGGCGCCCAGTGTGCGCTGTTCAGCGTCGCCCAATGCGTGCTCAATCCAGGCGATGAAGTGATTGTTGCCGAGCCGATGTACGTGA CCTATGAAGCGGTGTTCGGCGCCTGTGGCGCGGTGGTGGTGCCGGTGCCGGTACGCTCGGAAAACGGCTTTCGGGTGTTGCCCGAAGACGTTGCCGCGCG
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| Amino Acid Sequence |
>decarboxylase
MQQTSLTGGQALVRLLANYGVDTVFGIPGVHTLELYRGLPGSGIRHVLTRHEQGASFMADGYARVSGKPGVCFVITGPGVTNAATGIGQAYADSIPMLVI SSVNHTASLGKGWGILHECQDQRAMTAPITAFSAVALTAEDLPELIARAYAVFDSERPRPVHISVPLDVLAAPIARDWSNEVVRRPGRGTPAVAVLEQAV AKLQSAKRPMIIAGGGALNAASQLQELSTRLAAPLFTSVAGKGLLPPDAPLNAGSSLCVEPGWKLIAEADVVLAVGTEMADTDFWRERLPVNGDVLRVDI DPRKFNDFYPCAVALHGDAGQTLSALLERLPAQVRDASAAIASVAALREAVKSGHGPLQSIHQAILQRIAAELPDNAFISTDMTQLAYTGNYAFDSLAPR SWLHPTGYGTLGYGLPAGIGAKFGAPQRPGLVLVGDGGFLYTAQELATAVEELDSPLVVLLWNNDALGQIRDDMLGLDIEPIGVLPRNPDFAALARAFGC TVSQPQSLAELQTDLRHGFKRNGVTLIELKHACAH
BLASTP |
DIAMOND BLASTP (DIAMOND is faster than BLASTP)
Search for conserved domains in this protein at NCBI CDD site
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