Pseudomonas sp. URHB0015, N526_RS0115535
Cytoplasmic
Cytoplasmic Membrane
Periplasmic
Outer Membrane
Extracellular
Unknown
Sequence Data
| Strain | Pseudomonas sp. URHB0015 N526DRAFT_scaffold00012.12_C, whole genome shotgun sequence. [Details] | |
| DNA Sequence Upstream of Gene |
CGAACTGGCTGATGCACCACTGGGCGCAATTCGGCGCCCAGATGCCCAGGCGGTCACCCGCCTGCAGACCGAGCGCCAGCAAGGCCTTGGCATTGAGCTC GACCGCCTCGGCCAGTTGAGCCCAGGTGTAGCGCAACTGCTGATGGCGAACCACCAGCGCCTCGCCCTGCGGATACTGGGCTACCGTGTTATCGAAGGCC TGGCCGATGGTCATCGCCAGCAAGGCTTTGTCCTGTGAGCCACGGGTATAGCTGTGCTGTGGGTGAGCACTGTGTTGATCCATGACGACCCCTATTGTCT TTATTAGCGGGTGTGTGGAAGCCCGGCAGCCTGCCGCCGGACCCGACCTGAACTGCCTCTACTCTCGCTCAAGTTGACGTTAACGTAAAGGGCGATTGAC AGCCTTTCGTCTCAGGTTTACGTTAACGTAAAGGTGACAGCCGATTCGGCGCGCTTTACAGGCCGATTCCCCATTAATAAAAACAGTTTGAAGGTGCCCC
|
|
| DNA Sequence for Gene |
>N526_RS0115535
ATGAGCTATCCGACTCTGAACTTTGCCCTCGGCGAAACCATCGACATGCTGCGCGACCAGGTCCGCGCATTCGTCAGCAAAGAGATCGCGCCTCGCGCGG CACAGATCGACAGCGACAACCTGTTCCCGGCGGATCTGTGGCGCAAGTTCGGTGACATGGGCCTGCTCGGCATCACTGTTCCAGAAGAGTACGGCGGCGC CGGCCTGGGCTATCTGGCCCACGTGGTGGCCATGGAAGAAATCAGCCGCGGCTCGGCGTCGGTTGCCCTTTCCTACGGCGCGCACTCCAACCTTTGCGTC AACCAGATCAACCGCAACGGCAACCATGAACAGAAAGCCAAGTACCTGCCCAAGCTGATCAGCGGCGAACACATCGGCGCCCTCGCCATGAGCGAACCGA ATGCCGGCTCCGACGTGGTGTCAATGAAACTGCGCGCCGACAAGCGCGGCGACAAGTACGTGCTCAACGGCAGCAAGACCTGGATCACCAACGGCCCAGA CGCCAACACCTACGTGATCTACGCCAAGACCGACCTGGAAAAAGGTCCGCACGGCATCACCGCCTTCATCGTCGAGCGCGACTGGAAAGGCTTCAGCCGC AGTAACAAATTCGACAAGCTGGGCATGCGCGGTTCCAACACCTGCGAGCTGTTCTTCGACGACGTTGAAGTACCGGAGGAAAACATCCTCGGCGTGCTCA ACGGTGGCGTGAAGGTGCTGATGAGCGGTCTCGACTACGAGCGCGTGGTGCTCTCCGGCGGTCCGACCGGGATCATGCAGGCCTGCATGGACCTGATCGT GCCGTACATCCACGACCGCAAGCAGTTTGGCCAGAGCATCGGCGAATTCCAGCTGATCCAGGGCAAGGTCGCCGACATGTACACCCAACTCAATGCCAGC CGCGCCTACCTGTACGCCGTGGCCCAGGCTTGCGAACGTGGCGAAACCACGCGCAAGGACGCCGCCGGGGTGATCCTCTACAGCGCCGAACGCGCGACGC AAATGGCACTGGACGCGATCCAGATTCTCGGTGGTAACGGCTACATCAACGAATTCCCGGCAGGTCGTCTGCTGCGTGACGCCAAGCTGTACGAAATCGG CGCCGGCACCAGCGAGATCCGTCGCATGCTCATCGGCCGCGAACTGTTTAACGAAACCCGCTAA
BLASTN Search
|
DIAMOND BLASTX Search (DIAMOND is faster than BLASTX)
|
|
| DNA Sequence Downstream of Gene |
CGGAGCTGTCCATGGCTATCCTGCATACCCAGCTCAACCCCCGCTCGGCGGAATTCGCCAGCAACAGCGCCGCGATGCTGGCCCAGGTCGAGGCGTTGCA CACCCTGCTCGCCCAGGTCCAGCAAGGCGGTGGCGCCAAGGCTCAGGAGCGGCACACCTCGCGCGGCAAACTGCTGCCTCGCGAGCGGATCAACCGCTTG CTCGACCCGGGTTCACCGTTTCTCGAAATCAGCCAGTTGGCAGCCTATGAAGTCTACGGCGAAGACGTACCGGCAGCCGGCGTGATCGCCGGCATCGGCC GGGTCGAAGGCGTGGAATGCATGATTGTCGCCAACGATGCCACGGTCAAAGGCGGTTCCTACTACCCGCTGACAGTGAAAAAACATCTGCGCGCGCAGAC CATTGCCCAGCAGAATCGTCTGCCGTGCATCTATCTGGTGGACTCCGGCGGCGCTAACCTTCCGCGCCAGGATGAGGTGTTCCCGGACCGTGAGCACTTC
|
|
| Amino Acid Sequence |
>isovaleryl-CoA dehydrogenase
MSYPTLNFALGETIDMLRDQVRAFVSKEIAPRAAQIDSDNLFPADLWRKFGDMGLLGITVPEEYGGAGLGYLAHVVAMEEISRGSASVALSYGAHSNLCV NQINRNGNHEQKAKYLPKLISGEHIGALAMSEPNAGSDVVSMKLRADKRGDKYVLNGSKTWITNGPDANTYVIYAKTDLEKGPHGITAFIVERDWKGFSR SNKFDKLGMRGSNTCELFFDDVEVPEENILGVLNGGVKVLMSGLDYERVVLSGGPTGIMQACMDLIVPYIHDRKQFGQSIGEFQLIQGKVADMYTQLNAS RAYLYAVAQACERGETTRKDAAGVILYSAERATQMALDAIQILGGNGYINEFPAGRLLRDAKLYEIGAGTSEIRRMLIGRELFNETR
BLASTP |
DIAMOND BLASTP (DIAMOND is faster than BLASTP)
Search for conserved domains in this protein at NCBI CDD site
|