Pseudomonas sp. URHB0015, N526_RS0112620

Cytoplasmic
Cytoplasmic Membrane
Periplasmic
Outer Membrane
Extracellular
Unknown

Sequence Data

Strain Pseudomonas sp. URHB0015 N526DRAFT_scaffold00009.9_C, whole genome shotgun sequence. [Details]
DNA Sequence Upstream of Gene
TCCAGCACCGCCGGCTTGTCGAAGTCCCGGCCGAGGATCACCGCGCTGTACGCCAGTTGCTGCTGCGAGGCCTGCAGGTACTCGCCAATACTCGAGGCCA CCTTGGCCGCGTAAGCCCGATTGGCCTCCAGCGCGTTCTCCACCAGCACGGTTCGCTGCACCCGGTAGGCGGCGTAGAAACTGTTGATGAGGGTAGTCAG CGCCGTCGCCACGGCAAACAGCAGGATCAACCGGCGCAGGTTTATCTTCCCTGAAAGTCTGTCTGGCATACCGCTTACACCACCCCTTCTGAGCCAGGGG CAAGAGCCTGCAATTGACTCGCGAGGTTGAGCAACGGGGTTAGAAGCATAAGCAGACGCCTGTTCATGAGTGAGCGGATTCGACGCTGGTGATTGTAGCC AACCGCGCGCCAGCCGATGACCAACATTCTCACGCTTGCCGGGATTGATATGCCATGGATACAATTGCTAATAATTCTCACTAACAAAAAACCCGACGTG
DNA Sequence for Gene
>N526_RS0112620
ATGAGCGAACTCCAAGCGGCCATGCACCAGCAGCACCTACGCAGTGTCGAAGCCCTCTACGTCGGCCATCAAGGCTGGCTGTACGCCTGGCTGCAACGCA AGCTGGGCAACCGGGTGGACGCCGCGGACCTGATGCACGACACCTTCACCCGGGTGCTGGCGGCCAAGGCGCTTCCCGACCTGGCCGAACCCCGGGCGTA CCTGACCTGCGTGGCCAAGGGCATCATGATCAATTGGTATCAGCGCCAGGCGCTGGAACGCGCCTACCTGGCGGCGCTCGCGCAAGTGCCCGAGGCCCTG GCGCCCTCGCCGGAGCAGCGTTACCTGATCCTCGAAACCCTGCATGAAGTCGATGCCCTGCTCAACACCTTGCCGCCGCTGGTCAAGCGCGCGTTCCTGC TGTCGCAGATCAGCGGGATGAAATATGACGATATCGCGCTGCAACTGGAGCTGTCCCTGACCACGGTCAAGCGCTACATCAAGCAGGCCTTTGTGCAATG CCTGCAGTTGATGCCGGAATGA
BLASTN Search  |  DIAMOND BLASTX Search (DIAMOND is faster than BLASTX)
DNA Sequence Downstream of Gene
GTGGCCCAGCGCAGATCGATCCGCTGATCCTCGACGAAGCCGCCGAGTGGCTGATGCGCCTGGGCGAAGGCAACCTCAGCAGCGAGGAACTGCGCCAGTG GCAGCAATGGCGCACCAGCAGCCTCGAGTGTGAGCGCGCCTGGCGCCGTGCCGAACGTCTGCTCGGCAGTCTCGGCAGCTTGCCCGCGGACCTGGCGCTG TCGAGCCTCGATCGCCCGGCCAGCCCGCAACGCCGCGCCATGCTCGCCCGTCTCGCAGCGCTGCTGGCGCTGGCGCCGGCCAGTTGGCTGGGCTGGCAAT TGAACGAACGCCAGGGCTGGAGCGCCGATTTCCATTCGCCGATTGGCCAGCGCCGGCAACTGACCCTGCTCGATGGCAGCCAGGTCACCCTCAACACCGA CACCTCGATCGATGTCGCCTTCGATGGCCAGCAGCGCCTGGTACGGCTGCTCAGGGGGGAAATCCTGCTGCGCAGCGCCGCCGATATCCAGGTGCCCGCC
Amino Acid Sequence
>RNA polymerase sigma factor
MSELQAAMHQQHLRSVEALYVGHQGWLYAWLQRKLGNRVDAADLMHDTFTRVLAAKALPDLAEPRAYLTCVAKGIMINWYQRQALERAYLAALAQVPEAL APSPEQRYLILETLHEVDALLNTLPPLVKRAFLLSQISGMKYDDIALQLELSLTTVKRYIKQAFVQCLQLMPE
BLASTP | DIAMOND BLASTP (DIAMOND is faster than BLASTP)
Search for conserved domains in this protein at NCBI CDD site