Pseudomonas sp. URHB0015, N526_RS0110950 (ampC)
Cytoplasmic
Cytoplasmic Membrane
Periplasmic
Outer Membrane
Extracellular
Unknown
Sequence Data
| Strain | Pseudomonas sp. URHB0015 N526DRAFT_scaffold00008.8_C, whole genome shotgun sequence. [Details] | |
| DNA Sequence Upstream of Gene |
GCCGCCAAGGCGCTGCCAGTGCTCAAGGGCAAGCTGACCGGTAACGCGATTCGCGTTCCAACGCCAAACGTGTCGATGGCCATCCTCAACCTGAACCTTG AGAAAGCCACCACCCGTGACGAAATCAACGAGTACCTGCGCCAGATGGCCATGCACTCGGACCTGCACAAGCAGATCGACTACGTCAGCTCCCAGGAAGT GGTTTCCACCGACTTCGTTGGCTCGCGCCACGCAGGCGTAGTGGACGCGGAAGCGACCATCACCCAGGACAACCGCGTTGTACTGTACGTCTGGTACGAC AACGAGTTCGGCTACAGCTGCCAGGTCGTTCGCGTGATGGAAGACATGGCCGGGGTCAACCCGCCTGCATTCCCGCGCTAAGTCTTAGCCGCAGTTAAAA AACGCCCCGACATGCTCGGGGCGTTTTTGTTTGTGGTCGGGCAGTGGAGTGATAAGTTGGAGCGCTTTTCGTGCAACCTGAACATCTAAGGACGACTGGC
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| DNA Sequence for Gene |
>N526_RS0110950
|ampC
ATGCGCTTGATCCAACACTGCTGTACCGCGTTGCTCGCATTAACCTGCACAGCGGCCGTGGCCAGCGCCGATCAGAGCTCGATGGAGAGCAAGGTGCACA ACGCTGCCCGGGAAGTCATGCAGCAGTACAGCATTCCTGGCCTGGCCATTGCGGTGACGGTCGATGGCCATCGTACTTTCTATAGCTATGGCGTGGCCTC GAAGCAGACGCAGCAAAAGGTCACGGACGAGACGCTGTTCGAAATTGGCTCCATCAGCAAGACCTTCACCGCCACCCTCGCGGCCTACGCCGAAGTTGAA GGCAAGCTGTCGCTCACCGATCATCCCGGCAAATACCTGCCGGAGCTCGCCGGGAGTGCGTTCGATAGGGTCAATCTGATCAATCTGGGCACCCACACCG CGGGCGGCTTCCCGCTGCAGGTGCCGGATGAAGTCCAGAACAGCCGTCAACTGATGGACTATTTCAAGGCCTGGCAGCCGTCCTATGCCGCCGGCACCCA GCGCACCTACGCCAACCCGAGCATCGGCGCCCTGGGCATGATCACCGCCGCCAGCCTTGGCGTGCCGTTCGCCTCGGCGCTGGAGCAGCAACTGTTTCCC GCGCTGGGCATGCGCAACAGTTTTGTCCAGGTGCCGGCGAGCAAGATGGCGCAGTACGCCCAGGGCTATAACAAGCAGGACGCGCCTGTGCGTCTGAATC CCGGGGTACTGGCCGATGAGGCGTATGGGGTGAAAACCGGTTCCGCCGATTTGATCCACTTCGTCGAGGCCAATCTGGGAGTGGTCAAGGTCGAGGCCAA ACTGGCCCAGGCGCTGCAACAGACCCGTACCGGTTATTACCAGGTGGGCGCGATGACTCAGGATCTGATCTGGGAGCAGTACGACTATCCGGCGCCGCTG CAAACGTTGCTCGACGGTAACTCCAGCGCAATGATCCTGGGCAGCCATCCAGTGACAGCCCTGAATCCACCACGGCCACCGCAGCAGGCGGTCTGGGTCA ACAAGACTGGATCGACCGGCGGCTTCTCGGCCTATGTGGCCTTTGTGCCGGAGAAGAAAATCGGCATCGTGATTCTGGCCAACAAGAGCTATCCCAACGA ACCGCGCGTGCAGTTGGCGCACCTGATCCTGAGTGAGCTTGCGCATTAA
BLASTN Search
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DIAMOND BLASTX Search (DIAMOND is faster than BLASTX)
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| DNA Sequence Downstream of Gene |
TGCTGTCGATGAAATGGCTGCATGGGCTTTGCTGCGGGCTGATGATAGTTGGCCTGACCAGCTGTGGCAGCGGCGACTCTCAGGAAAGCTTTGGCGGTCC GACCATGGGCAGCAGCTATTCGATCCAATATGTTCGTAGGCCGACGGTGGCAGGCCCGGTGGAAGTGCGCCGGCAGGTCGAGGCTATTCTGGATGAGGTG GATCGGCAAATGTCCACTTATCGTGGCGACTCCGACATCGAGCGTTTCAATCGTTCGCCGGCCGATAGCTGTCAGGCGATGCCCGCGCCGGTTCTGGAAC TGGTCAGTGTCGGCGAGCAGCTGTCGCAGCAGAGCGGAGGTGCCTACGACCTGACGGTAGGTCCGCTGATGAACCTTTGGGGCTTCGGTCCACAGGCCCG GGGCGAACAGGTGCCCAGCGCGCAGGCCTTGGCCTCGGCCCGGCAGCGGGTCGGCTATGGGCATTTGCGCATCGAAGGTGACCAGCTGTGCAAGGACGCT
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| Amino Acid Sequence |
>beta-lactamase/D-alanine carboxypeptidase
MRLIQHCCTALLALTCTAAVASADQSSMESKVHNAAREVMQQYSIPGLAIAVTVDGHRTFYSYGVASKQTQQKVTDETLFEIGSISKTFTATLAAYAEVE GKLSLTDHPGKYLPELAGSAFDRVNLINLGTHTAGGFPLQVPDEVQNSRQLMDYFKAWQPSYAAGTQRTYANPSIGALGMITAASLGVPFASALEQQLFP ALGMRNSFVQVPASKMAQYAQGYNKQDAPVRLNPGVLADEAYGVKTGSADLIHFVEANLGVVKVEAKLAQALQQTRTGYYQVGAMTQDLIWEQYDYPAPL QTLLDGNSSAMILGSHPVTALNPPRPPQQAVWVNKTGSTGGFSAYVAFVPEKKIGIVILANKSYPNEPRVQLAHLILSELAH
BLASTP |
DIAMOND BLASTP (DIAMOND is faster than BLASTP)
Search for conserved domains in this protein at NCBI CDD site
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