Pseudomonas sp. URHB0015, N526_RS0109015
Cytoplasmic
Cytoplasmic Membrane
Periplasmic
Outer Membrane
Extracellular
Unknown
Sequence Data
| Strain | Pseudomonas sp. URHB0015 N526DRAFT_scaffold00005.5_C, whole genome shotgun sequence. [Details] | |
| DNA Sequence Upstream of Gene |
TCCGGCAGCGACAACGTGTCCATCGAGTACAAGGAGTTCGGCATTCGCCTGACGCTGACGCCGACCATCGTCGGCCGTAACCGGATCTCGCTGAAGGTCG CGCCGGAAGTCAGCGAACTGGACTTCAGCAATGCGGTGGTCATCGCCGGTACCACCGTCCCGGCCCTGACTATCCGCCGCACCGACACCAGCGTCTCGCT GGCCGATGGCGAAAGTTTCGTCATCAGCGGTTTGATCAGCAGTCGCAACAGCTCCCAGGTCAACAAATTCCCCGGGCTCGGCGACATTCCGGTGCTCGGC GCGTTTTTCCGCGATTCGACGATCAATCGCGAAGAGCGCGAGTTGCTGATGATCGTCACTCCGCACCTGGTCCAGCCGCTGGCAGCCGACGCCCAACTGC CGTCCCTTCCCGGCGAAAAACTGCGTAACTACGACCCGAATTTCTACCGCATGTTTTTCCTCGAAAACGGCGACTTCGATAAACGCAGCGGGCTGTCGCG
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| DNA Sequence for Gene |
>N526_RS0109015
ATGAGCCAGAGCCTGAGCCAGACTTTCCTCGCCATCACTCGCAACAACACTGATCTGGAGTGGCTGCAAGGTGCACTGGCGCCGCTGGGGCAGGTGGTCG GCACCAGCACGGACAACCTCGACGAACTGCTGGCGCTGGTGGACGTGACCTTCGCCAGCCTGCTGTTTGTCGGCCTCGACCGTGAACATCTGGTGGCGCA GTGCGCGATGATCGAGAGCGCGCTGGAGGCCAAGCCAATGCTGGCGATCGTCGCCCTCGGCGACGGCATGGACAACCAGTTGGTGCTCAATGCCATGCGC GCCGGGGCGCGGGATTTTGTCGCCTATGGCTCACGCTCCAGTGAAGTGTCCGGGCTGGTACGACGCCTCAGCAAGCGCCTGCCGCCAGTCGCGCCGAATA CGCAACTGGGCGGTCTGACCGTGCTGTACGGCGCGCAAAGCAGCGCCGACGGTGCCTTACTGTCGAGCCATCTGGCACTGGTGGTACAGCAAAGCGGCCA GCAAACCCTGCTGCTCGATCTCGGCTTGCCACGGGGCGACAGCCTGGCGTTGTTGGGGCTGGAAAGTTCGTTCCATTTCGGCGACGCCCTGCGCCATCTG CGGCGCCTCGATGCGACCCTGATCGACAGCGCCTTCACCAGCGCCGACGCCGGCCTGCGCATCCTGGCCTACGCCGACAACGACGAGCCACTGGAGCGCA CCAGCGCCGCCGAGCTGTACATGTTGCTCAGCGCGTTGCGCCAGCACTTCCAGCACATCGTGGTGAACCTGGCCGGGCAACCCGACAGCGAAGCCGTGCG CACCTTTGTGAGTCATTGCGACAAGCTCCTCTGGTACACCGACCAGAGCGTGCTCGATTGCCGGCGCAACCTGGCGGTGCTCAATCGCTGGCGGGAAAAA GGCATGAAGCTTGAGCACGCCAAGCTTTTGGTGGATCGCTATCTGCGCAACGTCGCACCGGATGCCGACACCCTGGGCAAGACCTATGGCCTGGAAATCA TCGCCACCCTGGCCTACAGCCCGGAAGTCCGGCTCAACGCCAAGAACCAGGGGCTGACCCTGTTTGAACTGGCGCCACGGGAAAACCTCACCCAACACCT GCGCACTCTCGGCACGCGCCTGGCCAAGCGTTCCGCCGGCCAGGAAAAACCCAAGGTCAATTGGCTGAACCGTCTGCGAGGCAGCAAATGA
BLASTN Search
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DIAMOND BLASTX Search (DIAMOND is faster than BLASTX)
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| DNA Sequence Downstream of Gene |
ACGGCGACAACCTGTTCGGCGCGCAATCCCGGAAATCGGGTGGCGGCCACGACCACGAGAGCCTGAAACTGGTGCTGCACCGGCACATCATCGACGCCAT CGAAGAGTCGGGGAAAAACCTGCTGGAAGGTTCCAGATTGGTCCTGACCCAGTTCGTCATGGACAAGGTCGCCGAGTACACCGCGCGCCTGCACCTGGCG ATTTCCCGCTACGAAATGGAGCGCCTGTCCGAAGAAATCGTCGACGAATTGACCGGCTTCGGCCCACTGGAAGTGCTGCTGCGCGACCCGGCCGTGACCG AGATTCTGGTCAATGGCCCGCACCGGGTATTCATTGAGCGTGACGGCGTGCTGCACCAGAGCGACCTGCGCTTTATCGACGCGCACCACGTCGAGCGAGT CATGCAACGCATCCTCGCGCCCCTCGGCCGGCGCCTGGATGAGTCTTCGCCGATGGTCGACGCACGCATGCCCGACGGCAGCCGGGTTAATGCGATCATC
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| Amino Acid Sequence |
>pilus assembly protein
MSQSLSQTFLAITRNNTDLEWLQGALAPLGQVVGTSTDNLDELLALVDVTFASLLFVGLDREHLVAQCAMIESALEAKPMLAIVALGDGMDNQLVLNAMR AGARDFVAYGSRSSEVSGLVRRLSKRLPPVAPNTQLGGLTVLYGAQSSADGALLSSHLALVVQQSGQQTLLLDLGLPRGDSLALLGLESSFHFGDALRHL RRLDATLIDSAFTSADAGLRILAYADNDEPLERTSAAELYMLLSALRQHFQHIVVNLAGQPDSEAVRTFVSHCDKLLWYTDQSVLDCRRNLAVLNRWREK GMKLEHAKLLVDRYLRNVAPDADTLGKTYGLEIIATLAYSPEVRLNAKNQGLTLFELAPRENLTQHLRTLGTRLAKRSAGQEKPKVNWLNRLRGSK
BLASTP |
DIAMOND BLASTP (DIAMOND is faster than BLASTP)
Search for conserved domains in this protein at NCBI CDD site
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