Pseudomonas sp. URHB0015, N526_RS0108210
Cytoplasmic
Cytoplasmic Membrane
Periplasmic
Outer Membrane
Extracellular
Unknown
Sequence Data
| Strain | Pseudomonas sp. URHB0015 N526DRAFT_scaffold00005.5_C, whole genome shotgun sequence. [Details] | |
| DNA Sequence Upstream of Gene |
TGGGCGCGTTGTTGCTGGCGATGCTGGCGTTCTGGTTGCTGGAGCCGCTGGTATTGGCTCGCGGCACCTCTTTCCGGCCCGAAATCCTGAGGTCCAGTCT GGACATGATTGCCCAGCGCCCTTGGACCGGCCTGGGCATGGGCTCTGGTTATACGGTGTTTGCCGAGGGCATACAGTTCGATCATGCACACAACCTGTTT ACCCATATCGCCATCGAACTCGGGTTGCCAGGTTTGCTGTTGTGGTGCGTGCTCTGGTTCGCCGTGCTGCGCGAAGCCTGGCGCGCCCGTGATACGTTAT ATGGCCGTGGCATCCTGGGGATCTGGATGTTTTCGTTCCTGGCCATGCAGTTCGATGCGGCAAGCATCAGCGGCACGCCGCGCGCCGAATGGTTCATCAG TTGGCTGCCTGTGGGACTGGCCACCGTGTTGGTTTGGACACAGGCCAAATTCCAAGGCTGTGATAAAATTCCGCGTTCTACCTAAGAAGTGAGCTCTACG
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| DNA Sequence for Gene |
>N526_RS0108210
ATGAGTGCAGCACCGCCCAAAGCGGAACAGGATTCGAGCCTGAAAATCTATTTTCGGCTGCTGGGGTACGTAAAACCCTACGTGGGCATTTTCCTGTTGA GTATCCTGGGCTTCGTGATATTTGCCTCCACCCAGCCCATGCTGGCCGGGATCCTCAAGTACTTCGTCGACGGTTTGAGCAACCCGGACGCGGTGCTGTT CCCCCATATACCGGTCCTGCGGGATTTGAAGTTGCTGGTCGCCGTGCCCCTGCTGATCATCCTGATCGCGGCGTGGCAGGGCCTGGGCTCGTTCCTGAGT AACTACTACCTGGCCAAGGTTTCGCTGGGATTGGTGCACGACCTGCGAGTCGAGTTGTTTAACAAGCTGCTGGTACTGCCCAATCGCTATTTCGATACCC ACAACTCCGGGCATCTGATTTCGCGGATTACCTTCAACGTAACCATGGTCACCGGCGCAGCCACCGATGCGATCAAAGTGGTGATACGCGAAGGCCTGAC CGTTATTTTCCTGTTTGCCTACCTGCTGTGGATGAACTGGAAGCTGACGCTGGTGATGCTGGCAATTCTGCCGCTGATTTCGTTCATGGTCGGCAACACC AGTAAGAAATTCCGCAAGCAAAGCAAGCGCATCCAGGTGGCGATGGGCGATGTGACGCACGTCGCATCGGAAACCATCCAGGGTTATCGCGTGGTGCGCA GCTTCGGCGGCGAGACCTATGAGCAGAAGCGTTTCGCCCGCGCCAGCCAGAGCAATACCGACAAGCAACTGCGCATGACCCGCACCAGTGCCATCTACAC CCCGGCGCTGCAGTTGGTGATTTACACCGCCATGGCCTCGTTGATGTTCCTGGTGCTGTTCTTGCGCGGTGATGCTACGGCCGGTGATCTGGTGGCCTAC ATCACGGCCGCAGGCTTGTTGCCCAAGCCTATCCGCCAACTGTCGGAAGTCAGCTCGACCATCCAAAAAGGTGTGGCGGGTGCCGAGAGTATTTTCGAAC AGTTGGATGTCGAGCCGGAAGTCGATAACGGCACGGTCGAACGCGAGCGCATCAGCGGCCGCCTGGACGTGCACAACCTGAGCTTCACCTACCCCGGCAC TGATCGCGAGGTGTTGAAAAACATCAGCTTCACCGCGACGCCTGGGCAGATGATCGCGTTGGTGGGGCGCTCCGGCAGTGGCAAGTCGACGCTGGCCAGC CTGATTCCACGCTTCTACCACCATGAAAGTGGCAAGATTCTGCTCGATGAAATCGAGATCGAAGACTATCGCCTGCGTAACTTGCGCAAGCATGTGTCCC AGGTCACTCAGCACGTGACGCTGTTCAACGATACGGTTGCCAACAACATCGCCTATGGCGACCTCGCGGGTGCGCCGCGTGAAGACATCGAGAAAGCGGC AGAAGATGCCTATGCGATGGACTTCATTTCCGAGTTGCCGCAAGGGTTGGACACAGAGGTCGGGGAGAACGGCGTTCTGCTCTCCGGCGGTCAGCGCCAG CGTCTGGCAATTGCCCGCGCGCTGCTGAAAAATGCCCCGCTGCTGATTCTCGACGAAGCGACCTCGGCCCTCGACACCGAGTCCGAACGCCACATTCAAG CGGCGCTGGATAAAGTCATGAAGGGCCGTACCACCCTGGTAATCGCCCATCGCCTGTCGACCATCGAAAAGGCCGACTTGATCCTGGTCATGGATCACGG TGAGATTGTCGAGCGCGGCACCCACGCCCAACTGTTGGCTCAAGGTGGGTACTATTCCCGCCTGCACGCCATGGGCCTGGATGAGCCGACCTCGGCGGGC ATCGCCTGA
BLASTN Search
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DIAMOND BLASTX Search (DIAMOND is faster than BLASTX)
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| DNA Sequence Downstream of Gene |
TCCGCTCTTGGACTGATTGTTCGCTGGACACGCAAAGTGCCCGGCGAATGATTTATCAGGCTGCGATGCATGCCTCAAAACTTCCGTCATCTGGCAGTTT TGCTCAAGAATTAACCAAATCAACAGCGTGTATTAGCGCGGATGAACCCGGCGAACTAGCCGGCGTTCACCCTGTGTTAATATCGCGCCCCTGTTCATTT TGTATGTGGGTTGCACCATGAAGTTGTCCATGCCGCGATTCGATCAGGCCCCTGTCTTGGTGGTCGGCGATGTCATGCTCGACCGTTACTGGCATGGTGG TACCTCACGGATTTCTCCTGAGGCACCCGTGCCGGTGGTCAAGGTCGATCAAATCGAAGACCGCCCGGGCGGTGCCGCCAACGTTGCCTTGAACATTGCA GCGCTCGGTGCGCCAGCCTCGCTGGTCGGTGTGACTGGTGATGACGAGGCCGCCGACAGCCTGGCCAACAGTCTCAAGGGGGCTGGCGTTCGTGCCCTGT
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| Amino Acid Sequence |
>lipid transporter ATP-binding/permease
MSAAPPKAEQDSSLKIYFRLLGYVKPYVGIFLLSILGFVIFASTQPMLAGILKYFVDGLSNPDAVLFPHIPVLRDLKLLVAVPLLIILIAAWQGLGSFLS NYYLAKVSLGLVHDLRVELFNKLLVLPNRYFDTHNSGHLISRITFNVTMVTGAATDAIKVVIREGLTVIFLFAYLLWMNWKLTLVMLAILPLISFMVGNT SKKFRKQSKRIQVAMGDVTHVASETIQGYRVVRSFGGETYEQKRFARASQSNTDKQLRMTRTSAIYTPALQLVIYTAMASLMFLVLFLRGDATAGDLVAY ITAAGLLPKPIRQLSEVSSTIQKGVAGAESIFEQLDVEPEVDNGTVERERISGRLDVHNLSFTYPGTDREVLKNISFTATPGQMIALVGRSGSGKSTLAS LIPRFYHHESGKILLDEIEIEDYRLRNLRKHVSQVTQHVTLFNDTVANNIAYGDLAGAPREDIEKAAEDAYAMDFISELPQGLDTEVGENGVLLSGGQRQ RLAIARALLKNAPLLILDEATSALDTESERHIQAALDKVMKGRTTLVIAHRLSTIEKADLILVMDHGEIVERGTHAQLLAQGGYYSRLHAMGLDEPTSAG IA
BLASTP |
DIAMOND BLASTP (DIAMOND is faster than BLASTP)
Search for conserved domains in this protein at NCBI CDD site
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