Strain | Pseudomonas sp. URHB0015 N526DRAFT_scaffold00005.5_C, whole genome shotgun sequence. [Details] | |
DNA Sequence Upstream of Gene |
GCCCGCGATGGCGAACGGGATGCGGTGTTCAACGTTTACGAATCGCTGCTGATGGAGGCGCCCAGCGCCAAGGATATTGTGGTCAGCCTGCTGGACAACC CAAAGATCCAGGTCACCGGCACGGTGCGTGAAGTGACCCCCTCGGTGTCGGCGCAAACCGGCACGGTGCAGGTCAAGGTGGCGCTCAAGGAGCTGCCCGC AGGCATGCGCCTGGGCTCGGTGGTCAGCGCCACCGGCAATGTCGCGGCGCAGAAGGTCGTCGAGTTGCCATGGTCGTCCCTGACCAAAAAAATCCATGAA CCGGCGGTATGGCTGGTGGACGACGAGGGCAAGGCAAGCCTGCATGCGGTTCAGGTTGGACGCTACCAGACTGGCAGCGTGCTGATTCGCGACGGTCTGA CGCCGGGGCAGAAGGTGGTCACGGCCGGGGGGCAACTGCTCCATCCGGGGGTTCTGGTGGAGATCGCCTCGCCGTCTGATAAAAGCTCGGAGAGCCTGCC
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DNA Sequence for Gene |
>N526_RS0106865
ATGAAGCGTTTGTTAGTAATGTCGGCGGGCCTGTTACTGGTGGCTTGTTCGAAACAGGAAGAACCGCCGGCACCGATTCGCCCGGTCCTTTCGGTGGTGG TCGAGGCGATGGGGCAGCAGGATCTGGGGCGATTTGCCGGGAGTATCCAGGCGCGTTACGAGAGCAATACCGGGTTTCGCGTGGGCGGACGTATTGCCAG TCGCAGTGTTGACGTCGGCAGCGAGGTCAGCGCTGGTACGTTGCTGGCAACCCTCGATCCGACCGATCAACAGAACCAGTTGCGCGCCGCCGAGGGCAGC CTGGCGCAGATCCAGGCGCAACTGATCAATGCTCAGGCCACGGCTCGGCGACAACAGGAGTTGTTCAATAAAGGCGTCGGTGCCCAGGCGCAACTGGACA CGGCCAACACCGACCTGAAAACCACCCAGGCTTCGATGGATCAGGCCAAGGCCGCGGTCGACCAGGCCCGTGATCAATTGTCGTACACCGAGTTGCGTGC CGATCACGCGGCGGTCATCACCGCCTGGAGTGCGGAGGCCGGGCAAGTGGTGACAGCCGGTCAGCAGGTGGTCACCCTGGCGCGTCCGGACATCAAGGAA GCAGTGATCGACTTGCCGGCGGAGCTCGCCGAACAGTTGCCGGCCGATGTGGTGTTTGAGGTGACGGCACAACTGGACCCGAGCATCCATACCACGGCTG TGGTCCGTGAAATCGAACCTCAGGCTGAAAGCACCACCCGCACCCGGCGTGCGCGCCTGACCTTGGCCGAGACCCCGCCGGGCTTTCGCCTCGGCACTTC GATCAGGGTCAGTCTCAGCTCGAGCGTCGCGCCGCGAGTCGAACTGCCGTTGACGGCCCTGCAGGACGTGGATGGCAAGCCGCGCATCTGGGTCGTCGAC CCTGCGACGAAGACCGTTTCGCCTCGGGACATCACCGTTATCAGCCGCAGCGGCGGCAGCGCGACGCTTGCCGGTGGCGTGAGCCAGGGTGAGCGCGTGG TCACTGCCGGGGTGCGCAGCCTGAAACCCGGACAAACAGTCAAAATCGACGAAGGAAGCCCGCAATGA
BLASTN Search
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DIAMOND BLASTX Search (DIAMOND is faster than BLASTX)
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DNA Sequence Downstream of Gene |
AAGGGAGTTTCAACTTATCCGAATGGGCTCTGAAGCATCAGTCATTCGTCTGGTACCTGATGTTCGTCGCCTTGTTGATGGGGGTGTTCTCCTACCTCAA CCTGGGGCGCGAGGAAGATCCGTCGTTTGCCATCAAAACCATGGTGATCCAGACCCGCTGGCCGGGCGCGACCCAGGATGAAACCCTCAAACAGGTCACT GACCGGATCGAGAAAAAGCTCGAAGAGCTGGACTCCCTCGACTATGTGAAAAGCTACACCCGTCCGGGCGAGTCGACGGTGTATGTGAACTTGCTCGACA CCACGCCGGCCGAGTCCATTCCGGATATCTGGTACCAGGTGCGCAAGAAGATCGGCGATATCCGTGGCAGCTTCCCCTCCGGCATCCAGGGGCCTTCGTT CAACGACGAGTTCGGTGACGTCTACGGTTCGGTTTATGCGTTTACCGCTGACGGCTTGACGATGCGTCAGTTGCGCGACTACGTCGAGCAGGCCCGCCTG
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Amino Acid Sequence |
>RND transporter
MKRLLVMSAGLLLVACSKQEEPPAPIRPVLSVVVEAMGQQDLGRFAGSIQARYESNTGFRVGGRIASRSVDVGSEVSAGTLLATLDPTDQQNQLRAAEGS LAQIQAQLINAQATARRQQELFNKGVGAQAQLDTANTDLKTTQASMDQAKAAVDQARDQLSYTELRADHAAVITAWSAEAGQVVTAGQQVVTLARPDIKE AVIDLPAELAEQLPADVVFEVTAQLDPSIHTTAVVREIEPQAESTTRTRRARLTLAETPPGFRLGTSIRVSLSSSVAPRVELPLTALQDVDGKPRIWVVD PATKTVSPRDITVISRSGGSATLAGGVSQGERVVTAGVRSLKPGQTVKIDEGSPQ
BLASTP |
DIAMOND BLASTP (DIAMOND is faster than BLASTP)
Search for conserved domains in this protein at NCBI CDD site
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