Pseudomonas sp. URHB0015, N526_RS0104585
Cytoplasmic
Cytoplasmic Membrane
Periplasmic
Outer Membrane
Extracellular
Unknown
Sequence Data
| Strain | Pseudomonas sp. URHB0015 N526DRAFT_scaffold00003.3_C, whole genome shotgun sequence. [Details] | |
| DNA Sequence Upstream of Gene |
TGCTGGGTTGAAACAGCACTTCCCAAAACAGCTGCAAGGGCTTTACATTGGTACTTGCAGCGCGTTGAAGGGCTTGGTTAAAAAATCAGCGCTTCCCTAA TCGCTGGTGATTTTTTAAACTGTTGAGTCCGCTCGCCCAACCGGGCAGCGCGCATATTGCATTCGCTCCGAGGAATACCATGGCCCGCGTAACCGTTGAA GACTGCCTAGAACACGTGGAAAACCGCTTTGAGCTGGTCATGCTCTCTACCAAGCGTGCCCGTCAACTGGCCACCGGCGGCAAAGAGCCACTGGTCCAGT GGGAAAACGACAAGCCTACCGTAGTCGCCTTGCGCGAAATCGCCGAAGGCCTGATGAGCTACGAGTTCATCGCCAATGCTGAAATCGTCGAAGACGAACC GCTGTTCGCAGCGTTCGAGGACGAGTCCAACGAGGCCGTCTAAGCCTATGCCTGGTCGACGTAGCACGGCGCGGGATCACAGCTTGTGGCAGGAGACATC
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| DNA Sequence for Gene |
>N526_RS0104585
ATGCCCAGCATAGACGCCCTCGCCGATCGCTTATCGACCTACCTCGGCAATGACCAGGTCAATCTGGTCCGCCGAGCGTACTTCTACGCCGAACAAGCCC ACGACGGCCAACGCCGCCGTAGCGGCGAGGCGTACGTCACGCATCCTCTTGCCGTGGCCAATATTCTTGCCGACATGCACATGGACCATCAGAGCCTGAT GGCCGCGATGCTGCATGACGTGATCGAAGACACCGGGATCGCCAAGGAAGCGCTGCAAGCGCAGTTCGGCGAAACCGTGGCCGAATTGGTCGATGGGGTC AGCAAACTGACCCAGATGAACTTCGAGACCAAGGCCGAAGCCCAGGCCGAAAACTTCCAGAAAATGGCCATGGCCATGGCTCGCGACATTCGCGTGATCC TGGTCAAGCTGGCCGACCGCCTGCACAACATGCGCACCCTGGAAGTACTGTCCGGTGAAAAGCGCCGACGCATCGCCAAGGAAACCCTGGAAATCTATGC CCCCATTGCCAACCGGCTGGGCATGCACGCCATCCGCATAGAATTCGAAGACCTCGGTTTCAAGGCCATGCACCCGATGCGCTCCGCGCGGATCAATCAG GCGGTCAAACGCGCCCGGGGCAACCGCAAGGAAATCGTCAACAAGATCGAAGAGTCCCTGGGCCATTGCCTGGCGATCGACGGCATCCAGGGCGAAGTCA GCGGTCGGCAGAAACACCTGTACGGCATCTACAAGAAAATGCGCGGCAAGCGTCGGGCCTTCAACGAGATCATGGACGTGTATGCGTTCCGGATCATCGT CGACAAGGTCGACACCTGCTACCGCGTGCTGGGTGCCGTGCACAACCTGTACAAGCCTTTGCCAGGACGCTTCAAAGATTACATCGCAATCCCCAAGGCC AACGGCTACCAGTCGCTGCACACCACGCTCTTCGGCATGCATGGCGTACCGATCGAAATCCAGATCCGCACCCGTGAAATGGAAGAGATGGCCAACAATG GCATCGCCGCGCACTGGCTGTACAAGTCCAGTGGCGACGAGCAGCCAAAAGGCACCCACGCCCGTGCCCGCCAGTGGGTCAAGGGCGTGCTGGAAATGCA GCAGCGTGCCGGCAACTCGCTGGAATTCATCGAGAGCGTGAAGATCGACCTGTTCCCGGACGAGGTCTACGTGTTCACGCCCAAAGGCCGGATCATGGAG CTGCCCAAAGGCTCCACGGCGGTCGACTTCGCCTACGCGGTGCACACCGATGTGGGCAATAGCTGTATTGCCTGCCGGATCAATCGCCGTCTCGCGCCGT TATCCGAACCGCTGCAGAGTGGTTCCACCGTTGAGATCGTCAGCGCTCCCGGGGCACGACCGAACCCGGCCTGGCTCAATTTTGTGGTCACCGGCAAGGC CCGCACACACATTCGCCACGCCCTGAAACTGCAGCGCCGCTCCGAGTCCATCAGCCTTGGCGAACGCCTGCTGAACAAGGTTCTCAACGGTTTCGACAGT TCGCTGGAGCAAATCCCGGCCGAACGCATCAAGGCGATGCTTGCCGAGTACCGCCTGGAGCTGATCGAAGACCTGCTGGAGGACATTGGCCTGGGCAACC GCATGGCCTATGTCGTGGCGCGCCGCCTGCTTGGCGAAGGCGAACAACTGCCAAGCCCCGAGGGCCCGCTGGCGATCCGCGGCACCGAAGGCCTGGTGCT CAGTTATGCCAAATGCTGCACGCCGATCCCGGGCGACCCGATTGTCGGCCACCTGTCCGCAGGCAAAGGCATGGTCGTGCACCTGGACAACTGCCGCAAT ATCAGCGAAATCCGCCACAACCCGGAAAAATGCATCCAGCTCTCGTGGGCCAAGGATGTCACCGGCGAATTCAATGTCGAGTTGCGCGTCGAGCTGGAGC ACCAGCGCGGTTTGATCGCGTTGCTGGCCAGCAGCGTCAACGCCGCCGACGGCAATATCGAGAAAATCAGCATGGACGAGCGCGATGGTCGCATCAGCGT GGTTCAACTGGTGGTCAGCGTGCACGACCGCGTACACCTGGCCCGCGTGATCAAGAAACTGCGCGCCCTGACCGGGGTGATCCGTATCACCCGCATGCGT GCCTAA
BLASTN Search
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DIAMOND BLASTX Search (DIAMOND is faster than BLASTX)
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| DNA Sequence Downstream of Gene |
GCCATTTATTACAAGGAGTCATATATGACCAAGACCGTTATCACCAGCGACAAGGCCCCGGCTGCCATCGGCACCTACTCCCAGGCAATCAAGGCTGGCA ACACCGTCTACATGTCCGGTCAGATCCCGCTCGATCCAAAAACCATGGAACTGGTCGAAGGCTTTGAAGCCCAGACCGTTCAGGTATTCGAGAACCTCAA GGCCGTTGCCGAAGCCGCTGGCGGCTCGTTCAAGGACATCGTCAAACTGAACATCTTCCTCACCGACCTGAGCCACTTCGCCAAGGTCAACGAGATCATG GGCAAGTACTTCGACCAGCCTTACCCTGCCCGCGCCGCCATCGGCGTGGCTGCCCTGCCGAAGGGCTCCCAGGTAGAAATGGACGCCATTCTGGTCATCG AGTAACACGCCCGGCGCAACCTCCACGGTTGCGCCAGCTCCGCCCCCAAAGGATTTCCTCATGCGCAAAGCGCTAGCTCTCTCATTGCTTGCGGTGTTTC
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| Amino Acid Sequence |
>(p)ppGpp synthetase
MPSIDALADRLSTYLGNDQVNLVRRAYFYAEQAHDGQRRRSGEAYVTHPLAVANILADMHMDHQSLMAAMLHDVIEDTGIAKEALQAQFGETVAELVDGV SKLTQMNFETKAEAQAENFQKMAMAMARDIRVILVKLADRLHNMRTLEVLSGEKRRRIAKETLEIYAPIANRLGMHAIRIEFEDLGFKAMHPMRSARINQ AVKRARGNRKEIVNKIEESLGHCLAIDGIQGEVSGRQKHLYGIYKKMRGKRRAFNEIMDVYAFRIIVDKVDTCYRVLGAVHNLYKPLPGRFKDYIAIPKA NGYQSLHTTLFGMHGVPIEIQIRTREMEEMANNGIAAHWLYKSSGDEQPKGTHARARQWVKGVLEMQQRAGNSLEFIESVKIDLFPDEVYVFTPKGRIME LPKGSTAVDFAYAVHTDVGNSCIACRINRRLAPLSEPLQSGSTVEIVSAPGARPNPAWLNFVVTGKARTHIRHALKLQRRSESISLGERLLNKVLNGFDS SLEQIPAERIKAMLAEYRLELIEDLLEDIGLGNRMAYVVARRLLGEGEQLPSPEGPLAIRGTEGLVLSYAKCCTPIPGDPIVGHLSAGKGMVVHLDNCRN ISEIRHNPEKCIQLSWAKDVTGEFNVELRVELEHQRGLIALLASSVNAADGNIEKISMDERDGRISVVQLVVSVHDRVHLARVIKKLRALTGVIRITRMR A
BLASTP |
DIAMOND BLASTP (DIAMOND is faster than BLASTP)
Search for conserved domains in this protein at NCBI CDD site
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