Pseudomonas sp. URHB0015, N526_RS0101555
Cytoplasmic
Cytoplasmic Membrane
Periplasmic
Outer Membrane
Extracellular
Unknown
Sequence Data
| Strain | Pseudomonas sp. URHB0015 N526DRAFT_scaffold00002.2_C, whole genome shotgun sequence. [Details] | |
| DNA Sequence Upstream of Gene |
TGTTCATCGGCATCGACATTGGCATCTGCATGGCGTTCATCATGGTGTAGCTCCCTGAAGGATTGGAAAGGCAAGGTGAAGTAGATGGCGCCGATTCTAG GGACTGGCGAACGTACGACAAGAGGCCCATCCAGCAGCGGAAAACACTGCGCCAACCGCGTTAATGCGATGACTTGCGCAGGAGTGGATGCTTTCGCTGC AGGGTGGATGTGATAACGGATAAATTGGTGACTGCGGCAGCGTTTTTGGTGTCGTGGATATGCGTCTTGTGTCTATCCAAATAACCCAGAGAAATAAACG GTCTAATACTGGAGTGGTTTTTTTGTGGGAGCTTGCAAGCGATGTACACAAACAGATCGCCTTCGCGGACAAGCCCGCTCCCACATCAATGATCATCGTC TTGTATGATGCGCCGCGTAAAAAATCAGCCGCACCGCGCAGCGGCTGACCTGTGTCCGTAGATCGGGAGCCCAGGGATTTCAGTCATCAAGGAGCTTTAC
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| DNA Sequence for Gene |
>N526_RS0101555
ATGGATTGGCTTTACCGGACTTCCCCGCTGACTTTCAGCCTGCTGCTGTCCAGCGCCCTGCCCTCGCAGGCCGCTGAAACCCTGCTGCCGGCGGTCACCG TGAACGCCGAGGAGCCGTCCGGTTACCAGGCCAGTGAGGCCTCTGTCAGCGGTTTCGAAGCAGCGCCGTTGCTCGACACGCCGGCCTCGATCACGGTGAT TAACGATGCCCTGATCAAGGACCAGCAGGCCCGCCTGCTCAGCGATGTATTGAAAAACGATGCCTCGGTGGGCCAGAGCTATGCGCCGATCGGCTACTAC GAAAACTTCGTGGTTCGTGGTTTCTCGCTGAACGCGGCCAGCAGCTACAAAATCAATGGCCGGACCATCGCCGGCGAGCAGAACGTCGGTCTGGAAAACA AACAGCAGGTGGAACTGCTCAAGGGCCTCGCGGGGCTTGAGAGCGGGGTCAGCGAGCCCGGCGGGCTGGTCAATTACGTGACCAAGCGACCGACCGATGT GCGCTCGGTCACGGTCTCCACCGATGATCGCGGCAGCGGTTACCTGGCCACCGACGTCGGCGGGTTCTTCGGCAGCGAACAACAGATCGGCCTGCGCGCC AACCTCGCACACGAGGACATCCACTCTTACGTCGAGCACACCAACGGCCAACGCGACTTTGCCGCGCTGGCCCTGGACTGGACCATCAGCGACGCGGCCC TGCTGCAACTCGACGTCGAATACCAGAACCGTCAGCAGCGTTCGGCGCCGGGCTATCAGTTGCTCGGCGGCACCGAGCTGCCGCACCACGCCTCGCCCAA AAAGCTACTCGCCCACCAGAGCGGCGCCAATCAGGTGACCACTGACGCGCTGAACCTCAACGGCAATTTCGAATACCGCTTCAGCGACACCTGGAAAGCC AACCTCAGCGCCTCGCGCAGTCGCGTGGTGATCGATGACTACAGCTCGTTCGCCTGGGGCTGCTATGGGGCGGCCAGTTGCAGCGATGTGGCCGTGCCCA ATCACTTCAGCGCCGAAGGCGATTACGACCTCTACGACTTCCGCAGCCCCGACGACACCCGACGCAACGACGAAGTGCAGGCCACCCTCAGCGGACGCTT CGACACTGCAGGCCTCGGTCATCAGCTCACCGTTGGCAGCAGTGCCTTTCGGCGCATCGTTGACAAGCGCGAGCCGATCAACCAGATGATCGGCAGCGCC AACATCGACAGCGAACCCGAGGATTTCCCGCGTTACCAGGGACCGCTCAACGACGCCTACCGCCACCTCGACAGCCGCCAGTACGGGCTGTTTTTCAACG ACAGGATCAGTTTCAACGAGCAGTGGCAGACCGTACTCGGCGCCCGCGAAGTGCGCCTCGACGAAGAAACCTTCGACAGCCAGGGTGACACCACGCGCCA TACCCAGCGCTATGAGTTCCTGCCCCAGGCCGCATTGATCTACAAACCGCTGCCGGAGCTGGCGCTGTACACCCGTTACAGCAAGGGCTTGTCCTTGGGC AGCGAAGCGCCGTGGTTTGCCAGCAACGCCTTCGAAATTCTCGCACCCAGCGTGTCGCGGCAGATCGAGGCCGGGATCAAGTACGACTGGCAGCGCATCA GCCTCGGCGCCGCGCTGTTCGAGATCCGCCAGGCCTACCAGTATTCGCGGCCGAATGCCGACGGCAGCTTCACCTTCGTCGAGCAGGGTGACCAGAAAAA CACCGGCCTGGAGCTGTCGGCCAATGGTTGGGCAAGCCAGCGCCTGCAGATTTCCGCAACTGTCGCAGCGATCCGTTCACGGGTCAGCGGCAGCGGCACG CCCGCCTATGAAGGGCACCAGACGATCAACGTACCGACCCTGCACGCCAGCCTCTACGGCGACTACGCACTGCCCTGGATCGATGGCCTGGCGTTGCTGG GTGGCGTGCAGTACAGCGGCAGCAAATACGCCAGCCAGCAAGGCGAGGCACAAGCCGGAGCCTATGCCGTATTCAACCTTGGCAGCCGCTACAGCACGCG CATCGACGGTTATGAAACGGTGTTTCGCCTGAGCGTCGACAACCTGTTCGACAAGCGTTACTGGCGCGATGTCGGGGAATACATGGGCGACAACTACCTG TTCCAGGGTGCACCGCTGACCGCACGCCTGAGCGCGTCGGTGAACTTCTGA
BLASTN Search
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DIAMOND BLASTX Search (DIAMOND is faster than BLASTX)
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| DNA Sequence Downstream of Gene |
TTCAGACACCTCGGTGTGTCAGACCCGCCGCCACACCCGCAGGCCGAGCCAGGCAGTAGTACATCACCCCCGGCACCACCAGCCCGACGATCCAGGAAAT GTCCACACCACCCAACTGCGCGACCATCGCTCCGGAATAAAAGTGAGTATCGACAAACGGCAACTGGATCAGCACGCCGATCACGTACACGCTGATGCCC AGCACGTTCCAGCCGCCATAGCGCCCCGCCGGGTCGGACAGGGCCGGGATGTCGTAGCGTTCCTTGTTGATGAAGTAGTAATCCACCAGGTTGATCGCGC TCCACGGGGTGAAGAAGGTCAGCAGGAACAGGATGAAGTACTTGAACGAGTTGAGGAACGAGTACTGCCCCAGCAGCGCCAGGGTGGTGGACGCGGCGAC GATCAACAGGACGAAGACCATGCGTTGCCCGGCGCTTATTTCCAGGCGCCGGCGCCAGCCGCTGATGATGGTGGCGATGCACATGAAGCTGCCGTAGGCG
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| Amino Acid Sequence |
>TonB-dependent receptor
MDWLYRTSPLTFSLLLSSALPSQAAETLLPAVTVNAEEPSGYQASEASVSGFEAAPLLDTPASITVINDALIKDQQARLLSDVLKNDASVGQSYAPIGYY ENFVVRGFSLNAASSYKINGRTIAGEQNVGLENKQQVELLKGLAGLESGVSEPGGLVNYVTKRPTDVRSVTVSTDDRGSGYLATDVGGFFGSEQQIGLRA NLAHEDIHSYVEHTNGQRDFAALALDWTISDAALLQLDVEYQNRQQRSAPGYQLLGGTELPHHASPKKLLAHQSGANQVTTDALNLNGNFEYRFSDTWKA NLSASRSRVVIDDYSSFAWGCYGAASCSDVAVPNHFSAEGDYDLYDFRSPDDTRRNDEVQATLSGRFDTAGLGHQLTVGSSAFRRIVDKREPINQMIGSA NIDSEPEDFPRYQGPLNDAYRHLDSRQYGLFFNDRISFNEQWQTVLGAREVRLDEETFDSQGDTTRHTQRYEFLPQAALIYKPLPELALYTRYSKGLSLG SEAPWFASNAFEILAPSVSRQIEAGIKYDWQRISLGAALFEIRQAYQYSRPNADGSFTFVEQGDQKNTGLELSANGWASQRLQISATVAAIRSRVSGSGT PAYEGHQTINVPTLHASLYGDYALPWIDGLALLGGVQYSGSKYASQQGEAQAGAYAVFNLGSRYSTRIDGYETVFRLSVDNLFDKRYWRDVGEYMGDNYL FQGAPLTARLSASVNF
BLASTP |
DIAMOND BLASTP (DIAMOND is faster than BLASTP)
Search for conserved domains in this protein at NCBI CDD site
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