Strain | Pseudomonas umsongensis UNC430CL58Col N519DRAFT_scaffold00001.1, whole genome shotgun sequence. [Details] | |
DNA Sequence Upstream of Gene |
GCCTTCCGCTCTGGCCAGTTAAAGGAAGTGGGCCAAGGTCAGGCCAAAGCCACGCTGATCCAGGACGACGGCAGCCTTTATCCGTTACCTGGCAAGTTAT TGTTCACCGACATCACCGTCGACCCGGGCACCGGTCAGATCATTCTGCGCAGCGAATTCCCTAACCCCGACCTCGACTTGTTGCCGGGCAGTTTCGTTCG CGTGCGTCTGGAACAGGCATTCAATCAGCAAGGCATCAGCGTTCCGCAACGGGCCATCCAGCGTGACAGCGCCGGTGTCGCCCAAGTGCTATTGCTCGAC GCCGAGCAGCGGGTCGGCCAGCAACCGGTAGAGCTGGGCGCGGTGCAGAGCGATCGCTGGATCGTCACCCGCGGCCTCAAGCCCGGCGACCGCATCGTCA CTGAAGGCCTGCAACACGCGCGCCCCGGTGAAAAAGTCCAGATCGACAACACCCCTCTTCCACTTGCCCAGGTCTCTGGTCAGTAAGCAGGACGCTTTTT
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DNA Sequence for Gene |
>N519_RS0122595
ATGCCGCAGTTCTTTATCGACCGCCCGGTGTTCGCCTGGGTGGTTGCCTTGTTCATCCTGCTGGCCGGTGCGTTGGCCATTGGGCAGTTACCCGTGGCGC AATACCCGAACGTTGCGCCGCCGAAAGTCGAAATCTACGCCACCTACCCCGGCGCTTCGGCGCAGACCGTGGACGAAAGCGTGGTCAGCCTGATCGAGGA AGAACTCAACGGCGCCGACCATCTGCTGTACTTCGAATCCCAAAGCAGCCTCGGCAGCGCCACCATCACCGCGACCTTCCAGCCGGGAACCAACCCGGAG ATGGCGCAAGTGGACGTGCAAAACCGCCTCAAGGTGGTGGAGTCGCGCCTACCTCAAGCGGTCACCCAGCAGGGTTTGCAGGTGGAGAAAGTTTCCGCCG GTTTCCTGCTTCTGATCACCCTCACCTCCAGCGACGGCAAGCTCGACGACGTGGCGCTCAGTGATTACCTGGCGCGCAACGTGATGAACGAGATCAAGCG TCTGGATGGCGTCGGCAAGGCCCAGTTGTACGGCGCCGAACGGGCGATGCGGATCTGGATCGACCCACAGAAGCTGATCGGTTTCAACCTGACCCCGGCT GACGTCAATGCCGCCATCGTTGCGCAGAACGCTCAGGTTTCCGCGGGCAGTATCGGCGACTTACCGACCCGCACCACCCAGGAAATCACCGCAACCATTC TGGTCAAAGGCCAGTTGTCGACGCCTGAAGAATTCGCCGACATCGTGCTCAAGGCTAATCCTGACGGCTCCACCGTACGCATCCGTGATGTGGCGCGGGT CGAGATCGGCAGCCAGGAGTATCAGTTCTCCACACGCCTGAACGGCAAACCGTCCACCGCCGTCAGTGTGCAACTGTCGCCGGGCGCCAATGCCCTGAGC ACCGCAACGCTGGTGCGGGCGAAAATGGACGAACTGGCGCGCTATTTCCCGGCCGGTGTCGAATACAAGATCCCGTACGACACTTCGCCCTTCGTCAAAG TCTCGATCACCAAAGTGGTGTACACCCTTGGCGAGGCAATGGTGCTGGTGTTTGCGGTGATGTTCCTGTTCCTGCAGAACATCCGCTACACGCTGATCCC GACGCTGGTGGTACCTGTGGCGTTGATGGGCACGTTTGCGACCATGCTCGCGCTGGGCTTCTCGATCAACGTGCTGACCATGTTCGGCATGGTGCTGGCC ATCGGCATCCTGGTGGACGACGCGATTGTGGTGGTGGAGAACGTCGAACGAATCATGGCCACCGAAGGCCTGTCGCCCAAGGAAGCGACGCGCAAGGCAA TGAAGCAGATCACCGGCGCGATAATCGGCATCACCCTGGTGCTGGTGGCGGTATTCATTCCGATGGCGTTCATGCAGGGCTCTGTCGGGGTGATTTACCA ACAGTTCTCGCTGTCCATGGCCACGTCGATCCTGTTCTCGGCGTTCCTCGCCCTGACATTGACCCCAGCCTTGTGTGCGACGCTGCTCAAGCCGATTGCC AAGGGAGAACACCACTCCAAGGGCGGTTTCTTCGGCTGGTTCAACCGGCGCTTTGAACAACTGACCGAGCGTTATCAGGGCTGGGTCGCCTATGCGTTGA AGCGCACCGGTCGTTACCTGTTGATCTACGGCGTGCTGCTGGTAGGCCTGGGATTGTGTTTCAGTCGCCTGCCCTCCTCGTTCCTGCCGGTGGAAGACCA GGGTTACACCATCACCGACATTCAACTGCCACCGGGTGCGAGCAAGAATCGCACGATCAATGTGGTGGAGCAGATCGAAGCACACAACGCTACCGAACCG GGCGTCGGCGACAGCACGGTGATTCTCGGTTTCAGCTTTTCCGGTAGCGGGCAGAATGCTGCGCTGGCGTTCACCACGCTCAAGGACTGGTCGGATCGTG GCAGCGATGATTCCGCTAGTTCGATTGCCGACAGGGCCAACGCAGCCCTCAGTCAGATCAAGGACGCCATGGCTTTCTCGGTGCTGCCGCCGCCGGTTGA CGGTCTCGGCACCTCCAGCGGTTTCGAGTTCCGCCTTCAGGATCGCGGCGGCCTCGGCCACGCCACGCTGATGCAGGCGCGCAGCGAATTGCTCGCCGCC GCCGAGAAGAGCCCGATCCTGATGAACGTGCGCGAAAGCGCCTTGGCCGAAGCGCCGCAGGTGCAACTGATCGTGGACCGCAAGCAAGCCAATGCCTTGG GCATCTCCTTTGCCGACATCGGCAACGTACTGTCCACCGCCGTGGGTTCGGCCTACATCAACGACTTCCCCAACCAGGGACGGATGCAACGGGTGGTGGT CCAAGCCGAAGGCGATCAACGCAGTCAGGTCGCCGATCTGCTGAAGATTCACGTGCGCAACAACGCTGGAAAAATGGTGCCGTTGTCGGCCTTCGTCCGC GCCAACTGGACCCAGGGCCCGGCGCAATTGACCCGATACAACGGCTACCCGGCCATCAGCATTTCCGGCGAGCCTTCGCCCGGTCACAGCACCGGCGAAG CCATGGCGGAAATTGAACGGCTGGTGGCGCAAGGCCCGGCGGGGTTGGGTCAGGAATGGACCGGGTTGTCGTTGCAGGAACGTTTGTCCGGCAGTCAGGC ACCGATTCTGCTCGGGCTGTCGCTGCTGATCGTGTTCCTGTGCCTGGCGGCGCTGTACGAGAGCTGGTCGATTCCAACGTCGGTGTTGCTGGTAGTGCCG CTCGGTGTGCTCGGTGCGGTACTGGCGGTGACGCTGCGCGGAATGCCCAACGACGTGTTCTTCAAGGTTGGGCTGATCACCATCATCGGCCTGTCGGCGA AGAACGCGATCCTGATCATCGAGTTCGCCAAGAGCCTTTATGACGAAGGCCACGATCTGGTCGACGCAACCTTGCAAGCCGCGCGCCTGCGGTTGCGGCC GATTGTCATGACGTCGCTGGCGTTCATCCTCGGCGTGGTGCCGTTGGCGATTGCCACCGGGGCCAGCTCGGCGAGCCAGCAAGCGATCGGCACCGGGGTG ATCGGCGGGATGATCACCGCGACGCTGGCGGTGGTGTTTGTGCCGGTGTTTTTTGTGGTGGTGATGAGGTTGGTGCGCAAGCGCCATAAGAACATCTAA
BLASTN Search
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DIAMOND BLASTX Search (DIAMOND is faster than BLASTX)
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DNA Sequence Downstream of Gene |
ATAACGACACACCCCTGTAGGAGCGAGGCTTGCCCACGAAGGCGGTGTATCAGTCAACATCAACGTTGAATGTTACGGCCATTTCGCGGGCAAGCCTCGC TCCTACGGGGGATGTGTCGTTGTGGTCACAACGGACTGCGCTGGGCTATGGTGTTTGCAAAACCCAGACACATCGAGCCTCCATGCCCCTACTCGCCCGC ACCCACCCTCGCCTGTCCGCCGCCGCCACCCTTGGCGTCGCGGCAGGCATTCTGGCTCCGGCCGATTCGATCCTCGGCAAAATCCTCATCGGCTGGAACG CCGGGGTCTGGACGTATCTGGCACTGATCATCTGGCTGACCATGCGCTCCAAAGCCGACGACGTGAAACGCATTGCCGAAGTCGAGGACGAAAACGCCGG GCTGGTGCTGTTCACCGTGAGCATGGCCGCACTGGCCAGCCTCGCCGCCATTACCCTCCAACTGGCGGGCAGCAAGGATCTGGACGCTTATCACCGGCTG
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Amino Acid Sequence |
>acriflavine resistance protein B
MPQFFIDRPVFAWVVALFILLAGALAIGQLPVAQYPNVAPPKVEIYATYPGASAQTVDESVVSLIEEELNGADHLLYFESQSSLGSATITATFQPGTNPE MAQVDVQNRLKVVESRLPQAVTQQGLQVEKVSAGFLLLITLTSSDGKLDDVALSDYLARNVMNEIKRLDGVGKAQLYGAERAMRIWIDPQKLIGFNLTPA DVNAAIVAQNAQVSAGSIGDLPTRTTQEITATILVKGQLSTPEEFADIVLKANPDGSTVRIRDVARVEIGSQEYQFSTRLNGKPSTAVSVQLSPGANALS TATLVRAKMDELARYFPAGVEYKIPYDTSPFVKVSITKVVYTLGEAMVLVFAVMFLFLQNIRYTLIPTLVVPVALMGTFATMLALGFSINVLTMFGMVLA IGILVDDAIVVVENVERIMATEGLSPKEATRKAMKQITGAIIGITLVLVAVFIPMAFMQGSVGVIYQQFSLSMATSILFSAFLALTLTPALCATLLKPIA KGEHHSKGGFFGWFNRRFEQLTERYQGWVAYALKRTGRYLLIYGVLLVGLGLCFSRLPSSFLPVEDQGYTITDIQLPPGASKNRTINVVEQIEAHNATEP GVGDSTVILGFSFSGSGQNAALAFTTLKDWSDRGSDDSASSIADRANAALSQIKDAMAFSVLPPPVDGLGTSSGFEFRLQDRGGLGHATLMQARSELLAA AEKSPILMNVRESALAEAPQVQLIVDRKQANALGISFADIGNVLSTAVGSAYINDFPNQGRMQRVVVQAEGDQRSQVADLLKIHVRNNAGKMVPLSAFVR ANWTQGPAQLTRYNGYPAISISGEPSPGHSTGEAMAEIERLVAQGPAGLGQEWTGLSLQERLSGSQAPILLGLSLLIVFLCLAALYESWSIPTSVLLVVP LGVLGAVLAVTLRGMPNDVFFKVGLITIIGLSAKNAILIIEFAKSLYDEGHDLVDATLQAARLRLRPIVMTSLAFILGVVPLAIATGASSASQQAIGTGV IGGMITATLAVVFVPVFFVVVMRLVRKRHKNI
BLASTP |
DIAMOND BLASTP (DIAMOND is faster than BLASTP)
Search for conserved domains in this protein at NCBI CDD site
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