Pseudomonas umsongensis UNC430CL58Col, N519_RS0121725

Cytoplasmic
Cytoplasmic Membrane
Periplasmic
Outer Membrane
Extracellular
Unknown

Gene Ontology

Ontology Accession Term GO Evidence Evidence Ontology (ECO) Code Reference Comments
Molecular Function GO:0008270 zinc ion binding
ISM
Inferred from Sequence Model
Term mapped from: InterPro:PIRSF001205
 ECO:0000259
match to InterPro signature evidence used in automatic assertion
Molecular Function GO:0004222 metalloendopeptidase activity
ISM
Inferred from Sequence Model
Term mapped from: InterPro:PIRSF001205
 ECO:0000259
match to InterPro signature evidence used in automatic assertion
Biological Process GO:0006508 proteolysis
ISM
Inferred from Sequence Model
Term mapped from: InterPro:PIRSF001205
 ECO:0000259
match to InterPro signature evidence used in automatic assertion
Molecular Function GO:0005509 calcium ion binding
ISM
Inferred from Sequence Model
Term mapped from: InterPro:PF00353
 ECO:0000259
match to InterPro signature evidence used in automatic assertion
Cellular Component GO:0005615 extracellular space
ISM
Inferred from Sequence Model
Term mapped from: InterPro:PF08548
 ECO:0000259
match to InterPro signature evidence used in automatic assertion
Molecular Function GO:0008237 metallopeptidase activity
ISM
Inferred from Sequence Model
Term mapped from: InterPro:SM00235
 ECO:0000259
match to InterPro signature evidence used in automatic assertion

Functional Classifications Manually Assigned by PseudoCAP

Functional Predictions from Interpro

Analysis Accession Description Interpro Accession Interpro Description Amino Acid Start Amino Acid Stop E-value
NCBIfam NF035945 NCBIFAM: serralysin family metalloprotease - - 25 481 0.0
Gene3D G3DSA:3.40.390.10 Collagenase (Catalytic Domain) IPR024079 Metallopeptidase, catalytic domain superfamily 38 268 0.0
Pfam PF00353 RTX calcium-binding nonapeptide repeat (4 copies) IPR001343 RTX calcium-binding nonapeptide repeat 360 393 5.1E-8
SMART SM00235 col_5 IPR006026 Peptidase, metallopeptidase 71 242 1.8E-20
PRINTS PR00313 NodO calcium binding signature - - 348 359 6.5E-11
PRINTS PR00313 NodO calcium binding signature - - 369 377 6.5E-11
PANTHER PTHR10201 MATRIX METALLOPROTEINASE - - 75 284 1.2E-10
PRINTS PR00313 NodO calcium binding signature - - 378 386 6.5E-11
CDD cd04277 ZnMc_serralysin_like IPR034033 Serralysin-like metallopeptidase domain 77 265 1.80163E-47
Gene3D G3DSA:2.150.10.10 - IPR011049 Serralysin-like metalloprotease, C-terminal 32 479 0.0
FunFam G3DSA:3.40.390.10:FF:000046 Serralysin - - 38 268 4.8E-119
PIRSF PIRSF001205 Serralysin IPR016294 Peptidase M10B 6 482 0.0
Pfam PF13583 Metallo-peptidase family M12B Reprolysin-like - - 170 246 8.2E-8
Pfam PF08548 Peptidase M10 serralysin C terminal IPR013858 Peptidase M10 serralysin, C-terminal 266 479 2.8E-70
SUPERFAMILY SSF55486 Metalloproteases ("zincins"), catalytic domain - - 25 264 3.29E-71
PRINTS PR00313 NodO calcium binding signature - - 387 396 6.5E-11
SUPERFAMILY SSF51120 beta-Roll IPR011049 Serralysin-like metalloprotease, C-terminal 268 474 1.19E-44

Search for additional functional domains at the NCBI CDD database website. Go to this protein's amino acid sequence and follow the link.