Pseudomonas umsongensis UNC430CL58Col, N519_RS0115245
Cytoplasmic
Cytoplasmic Membrane
Periplasmic
Outer Membrane
Extracellular
Unknown
Sequence Data
| Strain | Pseudomonas umsongensis UNC430CL58Col N519DRAFT_scaffold00010.10_C, whole genome shotgun sequence. [Details] | |
| DNA Sequence Upstream of Gene |
GTCGGCCTGATGCAGCCCTGGCGGTTCATCCGCATCAGCGACCGAGCGCTGCGCGGCAAGATCCAGCAACTGGTGGAGGAAGAACGCGTCCGCACCGCCG AAGCCCTCGGCGAGCGCTCCGACGAATTCATGAAGCTCAAGGTCGAAGGCATCCAAGACTGCGCCGAAGTGCTGGTCGCCGCGCTGATGGACGATCGCGA GCGGTATATCTTCGGCCGTCGTACGTTGCCGGAAATGGACATGGCCTCGCTGTCCTGTGCCATCCAGAACCTTTGGCTGGCGTCCCGCGCCGAAGGCCTG GGCATGGGCTGGGTGTCGCTGTTCGATCCGCAAGCCCTGGCAGACTTACTGGGTTTACCGGTCGGGGCCAAGCCCTTGGCTGTTCTTTGCCTGGGGCCGG TCAAGGAATTCTATCCAGCGCCGATGCTGGTACTCGAAGGCTGGGCGCAAGCGCGTCCGCTCAACGAGTTGCTGTATGAAAATTATTGGGGAGTGAGTCA
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| DNA Sequence for Gene |
>N519_RS0115245
ATGAGTGTGGCGTTGTTGAGTGTCGCCGCGGTCGCGCTGGATGCGCTGCTGGGTGAACCCAAGCGCTGGCATCCGCTGGTGGCGTTCGGTCGTTTTGCCG ATCGCATCGAACAACGTTTCAACTCCGCTGGCCGCGGCTGGCGCAGTCACGGGGTGACGGCTTGGGTGATGGCGGTCGTGCCGCTGACCTTGCTGGTCAC CGCGCTGTCCTGGGCACCTTACGTTGGCTGGATCGTCGAGATTCTCGCGCTCTATTGCGCGCTTGGCATGCGCAGCCTCGGCGAGCATGTCGAGCCGGTG GCCAAGGCCCTGCGCAGCGATGATCTGGTTGAGGCGCGCACACGTGTCGGTTATCTGGTCAGCCGCCAGACCAGCGAACTGGACAAAACCGAAGTCGCCC GCGCCGCCACCGAATCGGTGTTGGAGAACGGCAGCGATGCAGTGTTCGCCGCGCTGTTCTGGTTTGCTGTGGCGGGTGCGCCCGGTGTGGTGCTCTATCG TCTGAGCAACACCCTGGATGCGATGTGGGGTTATCGCAACGAACGCTTCGAGCGTTTCGGCTGGGCTGCCGCAAAGATCGACGATGTCCTGAACTACATT CCTGCACGCCTGGTGGCGTTGACCTACGCACTGTTGGGCAAAACCCGACTGGCGCTGAAATGCTGGCGCACCCAGGGGCCGACCTGGGACAGCCCGAATG CCGGGCCGGTGATGGCGGCTGGTGCCGGTGCGTTGGGTGTCGAGTTGGGCGGAGCGGCGATTTATCACGGCGAACTGCATCAGCGTCCGCAGTTGGGCGA AGGCGTGCCGGCGGATGCCGATTCCATCGACCGTGGCTGGCAATTGGTCCAGCGCGGGGTATGGTTATGGCTGCTGATTCTCTGCGTGGGGGCTGAATTC TATGCTTGA
BLASTN Search
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DIAMOND BLASTX Search (DIAMOND is faster than BLASTX)
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| DNA Sequence Downstream of Gene |
ACACGGTGGCCGGTTGCGCAAGGCAGCACTTGAATACGGTATCGCCGAAGCCGATTGGCTCGACCTGTCCAGTGGACTTGCGCCCTGGCCATTCCCGGTC CCGGACATCCCGCTGCGGGCCTGGGCACGTCTGCCGGAAACCGATGACGGTCTGGAGCAAGCCGCCTGTGACTATTACGGTGCGGCCCAGGTGTTGCCAG TGGCCGGTTCGCAAATGGCGATTCAGTTGCTGCCGCGTTTGCGCCGGGCCGGCAAGGTCGGTGTGCTGTCACCGTGTTACGCCGAGCACGCCGAAGCCTG GCGTCGCAACGGTTATGTCGTGCGTGAAGTCCTGGAGTCGGAAGTCGATTTCTTTCTCGACAACCTCGACGTGCTGGTGGTGGTCAATCCGAACAATCCC ACAGGCCTGAGCCTGACCCCGGCCCGCCTGCTGGATTGGCATGCGCGGCTGGCCCAGCGCGGTGGCTGGCTGGTGGTGGACGAAGCGTTCATGGACAACA
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| Amino Acid Sequence |
>cobalamin biosynthesis protein CobD
MSVALLSVAAVALDALLGEPKRWHPLVAFGRFADRIEQRFNSAGRGWRSHGVTAWVMAVVPLTLLVTALSWAPYVGWIVEILALYCALGMRSLGEHVEPV AKALRSDDLVEARTRVGYLVSRQTSELDKTEVARAATESVLENGSDAVFAALFWFAVAGAPGVVLYRLSNTLDAMWGYRNERFERFGWAAAKIDDVLNYI PARLVALTYALLGKTRLALKCWRTQGPTWDSPNAGPVMAAGAGALGVELGGAAIYHGELHQRPQLGEGVPADADSIDRGWQLVQRGVWLWLLILCVGAEF YA
BLASTP |
DIAMOND BLASTP (DIAMOND is faster than BLASTP)
Search for conserved domains in this protein at NCBI CDD site
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