Pseudomonas umsongensis UNC430CL58Col, N519_RS0112980
Cytoplasmic
Cytoplasmic Membrane
Periplasmic
Outer Membrane
Extracellular
Unknown
Sequence Data
| Strain | Pseudomonas umsongensis UNC430CL58Col N519DRAFT_scaffold00009.9_C, whole genome shotgun sequence. [Details] | |
| DNA Sequence Upstream of Gene |
CTGATCGACTCTTTTTCCCATCCCTGATCCCCCTTATCGTTGCCCCATCAAACAGCACTTGCCAAGCAAGAAGGTTTAAAGATGTCCAACAGTATGGGTA TTGCCAGCGCTTTCGTTTTGTCGTCCTTGTTCCTGTCTCCGTTCGCCATGGCTGAAGAGTCGCAGACATTCGTCGCACAAAATGCCGAACGCGCCAAAGC CTACGAACAGTATCAAAGCGAACTGACAGCCAAGGCCCAAGAGGCTGCGCAAACCCCTCAAGCGTCGAGCACTCAAGCCCAGCCACGGGCTGAGAAAGAC AGCTGATCCATACGTATCGCTCTGTTTCCCTCGACACTTTTCATCGGCTCTTCCCTTTGAAAAATTGTCTTCAAAGCCGCTGCTATCAGCGGCTTTTTTT CGTGGTGGTTTTAAACCCCTTCAGTTCACCTTCCCTGACTACAAACATCCGCACTTCAAAACAATGAAGTACTTAGTTGACCCAAGGAGCTTTACCGCAC
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| DNA Sequence for Gene |
>N519_RS0112980
GTGCGTTTCCCTCTCAGATTCAGTCCGCTGTTCATTGCAATCACTGCAACGATGGCCAACAACGCGCAGGCCGACGACGAATCCAGCCGCGAAGGCTTTG TCGATGGGTCGAGCCTCAACCTCAATGCCCGCAACTACTACATGAACCGCAATCGCCTGCAAAAGGCCGATGACAACATCGAGTGGGGTCAGGGCTTTCT CGGCCGCTTCGAATCGGGCTTCAGCCAGGGCACCATCGGTTTCGGCGTTGATGCCCACGCGATGCTCGGGCTCAAGCTCGACGGCGGTGGTGGCACCGAC GGGTCGAGCATCCTGCCGATCAGCGATGGCAACGGCAAGGCACCGGGCTCGTTTTCCACGGCTGGCGGCACCCTGAAAATGCGGGCCTTCGATACCGAAT TGAAGGCCGGCGACCTGTTCCTTGCCAACCCGGTGATCGCCGGTGGCGAAACCCGCATGCTGCCGCAGACCTTTCGCGGCGTCAGCCTGACCAACCACAG TGTCGACGGGTTGATGATCGAGGGCGGTCAGGCCAGCTTCACCAAACTCTACAACCAAAGCGGCCACACCCGCATCGGCACGTCCTATGGCAGCCTGGCC GATGGCGATGAAAGCCGGCATTTGAATTGGGCCGGCGTGGCCTGGAGCGGCCTGCCGGGTTTGACCAGCAGCCTGTATGCGGCCGAACTCAAGGACATCT GGAACCAGTACTACTACGACCTGGATTACACCTATGCGCTGAATGACTTGGTCAGCCTCAACCCGGGCCTGCACTTCTATCACACGCAAGACACCGGCGA TGCACTGCTGGGCAACATCGACAACAACACCTACAGCCTGCATTTCACCGTCGACGTGGGCCATCACAGCGTCACCGCCGCCTACCAGCGGGTCAACGGC AACACGCCGTTCGATTACATCAGCCAGGGCGACAGCATTTATCTCGACAACTCCCAGCAGTATTCGGACTTCAACGGTCCGAATGAGCGCTCGTGGAAAC TCAAGTACGCCTACGACTTTGCTGGCCTCGACATGCCCGGCCTGACCTCGGCGGTGTCCTACTCACGGGGTGAACTGGACCTGACCAAGGTCGATCCGGA CAGTCGCGGTTACGCCTCGTGGTACAGCGCCGACGGCAGAAACGCCAGGCATTGGGAACGAGACATCGAGCTCAAGTACGTGGTCCAGGGTGGCAAGGCC AAAGACCTGGCGATGCGTCTGCAATGGGCGTCTAACCGTGGCGGCAACGGTTACGGTGCGCTGGATCAGGACACGGATGAATACCGGGTAATTGTCGACT ACCCGGTGAATGTCTTCTAA
BLASTN Search
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DIAMOND BLASTX Search (DIAMOND is faster than BLASTX)
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| DNA Sequence Downstream of Gene |
GCTTCAATTAGCAAAAGGCCAGCATGTTTTGCTGGCCTTTTTTTTATCCGGGATTTATATAGGCGCGCAGGACGCAACCGGTTTCTGGGACTCTGCCCGA TTCTTGTAAAAGCACTTTCATAACGCCTTATTTGCAGAAGTCAGAACCATGAGTGTGAACAGTGCGAAATCCGGTGATCCGATCCGTTCGACACGCTCGG AGCGGCTTCTGGTTCTCAGTAGTGTGTTGTTGGTGATCGCAATACTGAGCATCGTCGCGTTCCTGCTGATCCGCGAACACGCCAATGCCAAATTGTCCGC CGCTCGCGCCGCCAACAATATCGTGCAATTGATCGACGCCGACGTGCTGCGCAATGTCGAACTCTATGACGTGTCCCTGCTGGGTTTGATCGCTGCCTCC CAGCGGGAAGACCTCAAGAGCGTTTCCCCAGCCATTCGTCACCTGGCCTATTTCGACCGCGCCACTGCCGCGCCGTACAAGGGCAACATCTTGTTGCTCG
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| Amino Acid Sequence |
>porin
MRFPLRFSPLFIAITATMANNAQADDESSREGFVDGSSLNLNARNYYMNRNRLQKADDNIEWGQGFLGRFESGFSQGTIGFGVDAHAMLGLKLDGGGGTD GSSILPISDGNGKAPGSFSTAGGTLKMRAFDTELKAGDLFLANPVIAGGETRMLPQTFRGVSLTNHSVDGLMIEGGQASFTKLYNQSGHTRIGTSYGSLA DGDESRHLNWAGVAWSGLPGLTSSLYAAELKDIWNQYYYDLDYTYALNDLVSLNPGLHFYHTQDTGDALLGNIDNNTYSLHFTVDVGHHSVTAAYQRVNG NTPFDYISQGDSIYLDNSQQYSDFNGPNERSWKLKYAYDFAGLDMPGLTSAVSYSRGELDLTKVDPDSRGYASWYSADGRNARHWERDIELKYVVQGGKA KDLAMRLQWASNRGGNGYGALDQDTDEYRVIVDYPVNVF
BLASTP |
DIAMOND BLASTP (DIAMOND is faster than BLASTP)
Search for conserved domains in this protein at NCBI CDD site
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