Pseudomonas umsongensis UNC430CL58Col, N519_RS0112875
Cytoplasmic
Cytoplasmic Membrane
Periplasmic
Outer Membrane
Extracellular
Unknown
Sequence Data
| Strain | Pseudomonas umsongensis UNC430CL58Col N519DRAFT_scaffold00009.9_C, whole genome shotgun sequence. [Details] | |
| DNA Sequence Upstream of Gene |
ATCTGGATGGCGATCATGATGTATCAGGTGCAGAAAAACGGCCTGACGGCGACCAACAAGACCCGTCTGAGTTGCCTGAGCCTGTTCTGGCACTTCCTGG ACGTGGTGTGGATCTGCGTATTCACCGTTGTTTATCTGATGGGGACTATGTAAATGGCTAACGCTCATTCCCACGATAGCCACGACGCCGGCCACGGCAG CGTCAAGTCCTACGCTATCGGTTTCATTCTGTCGGTGATCCTGACCGTCATTCCTTTTGGCCTGGTGATGTACCCGTCGCTGCCAAAAGCCCTGACCCTG TGGATCGTACTGGCCTTCGCAGTCATCCAGGTGCTGGTGCACCTGGTGTACTTCCTCCACCTGGACCGTTCGGCAGCGCAGCGTAACAACGTGATTGCGT TTGTTTTCGCCGCGATCGTAATCGTCCTGTTGGTAGGCCTGTCGCTGTGGATCATGTTCAGCATCCACACCAACATGATGGCGCACTGAGGTAAGTCCGG
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| DNA Sequence for Gene |
>N519_RS0112875
ATGTCCTTTAAGCACTTTATCCAAATCACCAAACCGGGGATCATTTTCGGTAACGTGCTTTCTGTGGCAGGCGGATTCTTCCTGGCCTCCAAAGGGCATG TCGATCTGGCCATTTTCCTGGCCGCGATGATCGGCACCTCCCTGGTAGTAGCCTCCGGTTGCGTGTTCAACAACTGCATCGACCGCGACATCGACCTGAA GATGGAGCGCACCAAGAACCGGGTGCTGGTCCAGGGCTTGATCTCCCTGAAACTGGCCCTGGCTTATGCGACCGTCCTGGGTGTCGCCGGCGTTGCGTTG TTGTACAAGGTGGCCAACCCGTTGGCCGCGCTGTTCGCGGTGATCGGTTTTGTCATCTACGTCGGCTTCTACAGCCTGTACCTCAAGCGCAAGTCGGTTC ACGGCACGCTGGTGGGCAGTCTGTCGGGGGCGATGCCGCCGGTGATCGGTTACGTCGCAGTCAGCAATAACTTCGACATGGCCGCGCTGACGTTGCTGGT GATGTTCAGCCTGTGGCAGATGCCGCATTCCTACGCCATCGCAATCTTCCGCTTCAACGATTACCTGGCCGCATCGATTCCGGTGCTGCCAGTGAAGCGC GGCATTGAAGTGGCCAAGAAACACATCCTGCTCTACATCCTGGCCTTCCTCGTGGCGACCTTGATGCTGACCTTCAGCGGCTACGCCGGCATGAGCTACC TCGCCGTCGCCGCGGCCATGGGCATGTACTGGCTGTACATGGCCTGGACCGGCTACAAGGCAGTGGATGACACGGTCTGGGCACGCAAGCTGTTCGTGTT CTCGATCTTCACCATTACTGCGTTGAGCGTGATGATGTCCCTGGACTTCAAAGTGCCGAGCGAGTTGCTGCTGACGTACGCGCCTTAA
BLASTN Search
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DIAMOND BLASTX Search (DIAMOND is faster than BLASTX)
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| DNA Sequence Downstream of Gene |
GCGTCGGATGCTGTAAAGAAAAGCCCCGCCCTTCGAGAGAATGGCGGGGCTTTTTGTTGGGGGCGATTCAGGTGGCTCTGAACTCGAGCCCCTTTTGCAT AACTCTTGGTTGTGCGAAGGATCAGATTGTTTAGGAAAACGGAGTATGGCATTTAGGAAGTCTCCTAATGCCAGCACCTGCTTTGCTCGCTACGGTTCAG CTGGGCCGGGCAGGGATGAATGACCATCTCGGGTCAGGATTAGTATCGTGAAGGGAAATGGAATCAGAGGGCAAGGACGTGCAGGATTTTCAGCGATCTC TATTATTTTCAATCGTGTTGTCGATCACCTTTGGGCCGATTGCCTTGATTATATTGAGGCAGTCCATCTTGCATGGACGATTGAGCGCCGTACCAGGTGC GTTCGGAGCAGCCCTGGCGGATGCTCTGTATGCCGCAGTCGCGTTGATGGGGGTAGCGCTGATCAAAACCTTTGTATTGGGCTATCTGGATCTTCTGACA
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| Amino Acid Sequence |
>protoheme IX farnesyltransferase
MSFKHFIQITKPGIIFGNVLSVAGGFFLASKGHVDLAIFLAAMIGTSLVVASGCVFNNCIDRDIDLKMERTKNRVLVQGLISLKLALAYATVLGVAGVAL LYKVANPLAALFAVIGFVIYVGFYSLYLKRKSVHGTLVGSLSGAMPPVIGYVAVSNNFDMAALTLLVMFSLWQMPHSYAIAIFRFNDYLAASIPVLPVKR GIEVAKKHILLYILAFLVATLMLTFSGYAGMSYLAVAAAMGMYWLYMAWTGYKAVDDTVWARKLFVFSIFTITALSVMMSLDFKVPSELLLTYAP
BLASTP |
DIAMOND BLASTP (DIAMOND is faster than BLASTP)
Search for conserved domains in this protein at NCBI CDD site
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