Pseudomonas umsongensis UNC430CL58Col, N519_RS0110785
Cytoplasmic
Cytoplasmic Membrane
Periplasmic
Outer Membrane
Extracellular
Unknown
Sequence Data
| Strain | Pseudomonas umsongensis UNC430CL58Col N519DRAFT_scaffold00007.7_C, whole genome shotgun sequence. [Details] | |
| DNA Sequence Upstream of Gene |
GGCCACGGCAAACCTATCCTGCAATTTGGCAAGATCGGCGTAGGCCTGAGCAAGGTCGAACCCGCCGGTCAGTACGCACTGAAATTGACCTTCGACGACG GCCACGACAGCGGCCTGTTCACCTGGGAATATCTGTACCAGTTGGCGGTGCGCCAAGAGGATCTGTGGAACGATTATCTTGCCGAACTCAAAGCGGCTGG AAAGACCCGTGATCCGAACGAGTCGGTCGTCAAGCTGATGCTCTAGGTCAGGCCTCGAGGTATTTAGAGGGCATTTTCTAATTCCATCTGTTTGAATGCT TGGCTGCCGGGTCAACGATTGGCCCGCTTGCGAAAAAAATTAAACTCGGGTAACCAATGGAGCTGGCAAGTTCCGTGCAGTGCTCTCTGAACTGAAAAGC AGCTATGCAATCAACGGTCACCCGAGCAGTAGTACCTGGCGCATTGTGTGACTACACAGCTGGGCTCAGGTACTCGCCTCAGGACAATGGAGCGTCGTAG
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| DNA Sequence for Gene |
>N519_RS0110785
ATGAGTAACAAGCAAAACGATGACCTGAAATTCCAGGCTTCAGAAAATACCTTGGGACTGAATCCTGTTGTTGGGCTGCGTAGAAAGGATCTACTGGGCT CTGCCCGAATGGTGCTGACCCAGGCCATCAGACAACCCATCCACAGTGCCAGGCACGTCGCCCATTTCGGCATCGAACTCAAGAACGTGCTGTTCGGAAA ATCCGAGCTTCAACCGCAAAGCGACGACCGCCGTTTCCTCGACCCGGCCTGGAGCCAGAACCCTCTCTACAAACGTTATTTGCAAACTTATCTGGCGTGG CGCAAGGAACTCCACACCTGGATCGATAAGAGCAATCTCTCGCCCAAGGACGTCGCTCGCGGGCATTTCGTGATCAACCTCATGACCGAAGCCATGGCCC CGACCAACACGGCAGCCAACCCGGCGGCGGTCAAACGCTTCTTCGAAACCGGTGGCAAAAGCCTGCTCGACGGCCTCTCCCACCTGGCCAAGGATCTGAT CCACAACGGCGGGATGCCGAGCCAGGTCAACATGGGCGCGTTTGAAGTCGGCAAGAGCCTGGGTGTAACCGAAGGCGCAGTGGTCTTTCGCAACGACGTG CTGGAGCTGATCCAGTACAAGCCGATCACCGAGCAAGTGCATGAACGCCCACTGCTGGTGGTGCCGCCGCAGATCAACAAGTTCTACGTTTTCGACCTGA GCCCGGACAAGAGCCTGGCGCGCTTCTGCCTGCGCAACAACGTGCAGACCTTCATCGTCAGCTGGCGCAACCCGACCAAGGAGCAACGCGAGTGGGGTCT GTCGACCTACATCGAAGCGCTCAAGGAAGCGGTCGATGTAGTCACCGCGATCACCGGCAGCAAAGACGTGAACATGCTCGGCGCCTGCTCCGGTGGTATC ACCTGCACTGCCCTGCTGGGTCACTACGCAGCGATCGGCGAGAAGAAAGTAAACGCCCTGACTCTGCTGGTCAGCGTGCTCGACACCACCCTCGACAGCG ACGTGGCCCTGTTCGTCGACGAGCAGACCCTCGAAGCCGCCAAGCGCCATTCCTACCAGGCCGGTGTGCTGGAAGGTCGCGACATGGCGAAAGTCTTCGC CTGGATGCGCCCCAACGACTTGATCTGGAACTACTGGGTCAACAACTACCTGTTGGGCAACGAGCCACCGGTGTTCGACATTCTGTTCTGGAACAACGAC ACCACTCGCCTGCCGGCCGCTTTCCACGGCGACCTGATCGAGATGTTCAAAAACAACCCACTGATCCGTCCCAACGCACTGGAAGTGTGCGGCACACCGA TCGACCTCAAACAGGTCGATGCCGACATCTTTTCCCTGGCCGGTACCAACGATCACATCACCCCGTGGAAGTCCTGCTACAAGTCGGCACAACTGTTCGG TGGCAAGGTCGAGTTCGTGCTGTCCAGCAGCGGGCATATCCAGAGCATTCTGAACCCGCCCGGCAACCCGAAAGCGCGCTACATGACCAGCACCGACATG CCGGTCAAGGCCGAGGACTGGATGGAAAACTCTACCAAGCACACCGACTCCTGGTGGTTGCATTGGCAAGCGTGGCAGGCCGAACGCTCGGGCAAACTGA AGAAGTCCCCCGCCAACCTTGGCAACAAGGCCTATCCCGCGGGTGAGGCGTCGCCAGGCACATATGTGCACGAACGTTGA
BLASTN Search
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DIAMOND BLASTX Search (DIAMOND is faster than BLASTX)
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| DNA Sequence Downstream of Gene |
GCTTCAAACAACTCGCAGTCCGCGGCACTGGGAAGTGCCGCGATTGTCATTAATCAGCCTCGAGGCCAGCCTCGAACATTCTGCGACGGCCCGGGATGGC CCGATCAGCGTTTAAAACCTACAGGGCTTCGTGCATGCCGCAACCGTTCATATTCCGTACCGTCAACCTGGATGGGCAGACCCTCCGCACCGCGGTACGC CCCGGCAAGCCTCACTTGACGCCCTTGCTGGTTTTCAATGGCATCGGTGCCAACCTGGAGCTGATATTTCCGTTCGTCCAGGCGCTGGATCCGGACCTGG AAGTCATCGCCTTCGACGTACCCGGTGTCGGCGGCTCATCGACGCCCAGCCGGCCGTATCGCTTTTCGGGCCTGGCGAAACTGACGGCGCGAATGCTCGA CTATCTCGATTACGGGCAGGTCAATGTGATCGGCGTGTCATGGGGGGGCGCCCTGGCGCAGCAATTTGCCTATGACTATCCCGAGCGCTGCAAGAAGCTG
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| Amino Acid Sequence |
>poly(R)-hydroxyalkanoic acid synthase
MSNKQNDDLKFQASENTLGLNPVVGLRRKDLLGSARMVLTQAIRQPIHSARHVAHFGIELKNVLFGKSELQPQSDDRRFLDPAWSQNPLYKRYLQTYLAW RKELHTWIDKSNLSPKDVARGHFVINLMTEAMAPTNTAANPAAVKRFFETGGKSLLDGLSHLAKDLIHNGGMPSQVNMGAFEVGKSLGVTEGAVVFRNDV LELIQYKPITEQVHERPLLVVPPQINKFYVFDLSPDKSLARFCLRNNVQTFIVSWRNPTKEQREWGLSTYIEALKEAVDVVTAITGSKDVNMLGACSGGI TCTALLGHYAAIGEKKVNALTLLVSVLDTTLDSDVALFVDEQTLEAAKRHSYQAGVLEGRDMAKVFAWMRPNDLIWNYWVNNYLLGNEPPVFDILFWNND TTRLPAAFHGDLIEMFKNNPLIRPNALEVCGTPIDLKQVDADIFSLAGTNDHITPWKSCYKSAQLFGGKVEFVLSSSGHIQSILNPPGNPKARYMTSTDM PVKAEDWMENSTKHTDSWWLHWQAWQAERSGKLKKSPANLGNKAYPAGEASPGTYVHER
BLASTP |
DIAMOND BLASTP (DIAMOND is faster than BLASTP)
Search for conserved domains in this protein at NCBI CDD site
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