Pseudomonas umsongensis UNC430CL58Col, N519_RS0110075
Cytoplasmic
Cytoplasmic Membrane
Periplasmic
Outer Membrane
Extracellular
Unknown
Sequence Data
| Strain | Pseudomonas umsongensis UNC430CL58Col N519DRAFT_scaffold00007.7_C, whole genome shotgun sequence. [Details] | |
| DNA Sequence Upstream of Gene |
CCATTTGTTCAGTGTTCGGGACGGCGCGGGCACGGTAGCCCTTGCTGACGAAAAAGCGTTCCAGCAGGCTGCTCAGCCCTGGATCGTCGTCAACGATAAG AATTTTTTCGCCTTCAGCAGTTTGTGCAGTGCTGCTCATTGGATGCTCCTTTGATCTCGGCGCGCATTATGGCGTAGCTGCCGTTATACGCACCGTGTGC ATTGTTAGCAGATTTTTCCTTCACCGCCAGAAAACCAGTCTTTTCGCCTACAGCCTGCAATGCCCCCGAATGACACAACGCTGGTTATAATGCGCGGCCT TTTGTGTCAGGCAACGTCTGATCGTTATTGCCGGTAACTACTTTTTATTTTCATGGTGCTGGCAGTAATTGTTCGATTTCACGGGTCAACGGCAAGCCTG TTGATCCAGGTAGCGGCGCTCGCCAGGCCGCTCAACCAGACTCGCGAAGGCCCTATTTCCGCGCCTGCGAGCCTGCTTTCACAATTTGTCAGGTGGTTTT
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| DNA Sequence for Gene |
>N519_RS0110075
ATGGACAGCATCAACAGCCGCATCGCCGAGGAACTCGGCGTCCGCCCACAACAGGTCGAAGCGGCCGTCGCGCTACTCGATGAAGGCTCCACGGTGCCCT TCATCGCCCGCTACCGGAAAGAAGTGACCGGCAGCCTCGATGACACGCAACTGCGTCATCTGGAAGAGCGTCTGCGCTACCTGCGAGAACTCGACGAACG GCGTATCAGCATCCTCGCCAGCATCGAGGAGCAAGGCAAGCTGACCCCTGCACTTGAGCGCGACATCAAGCTCGCCGACACCAAGACCCGCCTCGAAGAC TTGTACCTGCCGTACAAGCAGAAGCGCCGCACCAAGGGCCAGATCGCCCTGGAAGCCGGCCTCGGCGAACTGGCCGACGGCCTGTTCAACGATCCAACCC TGAACCCGGAAACCGAAGCGGCGCGCTTCATCGACGCCGAAAAAGGCGTGGCCGATGTGAAGGCCGCCCTCGAAGGCGCCAAGTACATCCTCATGGAGCG CTTCGCCGAAGACGCCGGTCTGCTGGACAAGCTGCGCAATTACCTCAAGCAGGAAGCCACCCTCAGTGCCCGCGTGATCGCCGGCAAGGAAGAGGAAGGC GCCAAGTTCCGCGACTATTTCGAACACGACGAACCGCTGAAAAGCATGCCGTCCCACCGCGCACTGGCGATTTTCCGTGGCCGCAACGAAGGCATTCTCA GCTCCGCGCTGAAAGTCGGTGACGAGCTGCCGGGCACCATGCACCCGTGCGAAGGCATGATCGGCCAGCAATTCGGCATCCAGAACCAGAACCGCGCCGC CGACAAATGGCTGGGCGAAGTGGTGCGCTGGACCTGGAAGGTCAAGCTCTACACCCACCTGGAAACCGATCTGCTGGGCGAGCTGCGCGATGGCGCGGAA ACCGAAGCGATCAACGTGTTCGCCCACAACCTGCACGACCTGCTGCTGGCCGCGCCGGCCGGCCCGCGTGCCACCCTGGGCCTCGACCCGGGCCTGCGTA CCGGCTGCAAGGTCGCCGTGGTCGACGCCACCGGCAAGCTGCTGGACCACGCCACGGTTTACCCGCACGTGCCGCACAACAAGTGGGACCAGACCCTCGC CGTGCTCGCCGCCCTGTGCGCCAAGCATTCGGTGGACCTGATCGCCATCGGCAACGGTACCGCCAGCCGCGAAACCGACAAACTGGCCGCTGAACTGATC AAAAAATACCCAGCCATGAAGATGACCAAAGTCATGGTCTCCGAGGCTGGTGCATCGGTTTACTCGGCCTCGGAACTGGCTTCCAAGGAATTCCCGGATC TGGACGTGTCGATCCGTGGCGCGGTGTCCATCGCTCGTCGCTTGCAGGACCCGCTGGCCGAGCTGGTGAAAATCGATCCGAAATCCATCGGCGTTGGCCA ATACCAGCACGACGTGTCGCAGCTGAAACTGGCGCGCGGCCTGGACGCAGTGGTCGAAGACTGCGTGAACGCCGTGGGCGTGGACGTGAATACTGCATCC GTGGCGCTGCTGGCGCGCATCTCCGGCCTCAACGCGACCCTGGCGCAGAACATCGTTACCCACCGCGACGAGCACGGTGCGTTCAAAACCCGTGCGGCAT TGAAGAAAGTCGCCCGCCTGGGTGAAAAAACCTTCGAACAGGCCGCCGGCTTCCTGCGCGTAATGAATGGCGACAACCCGCTGGATTCGTCGGCGGTTCA CCCGGAAGCCTATCCGCTGGTGCAGCGCATTGCTGCTGAGACCGACCGCGACATTCGCTCGCTGATCGGCGACGCCGCGTTCCTCAAGCGCCTGGATCCG AAGAAGTACACCGACGAAACGTTCGGCCTGCCGACGGTCACCGACATTCTGCAAGAGCTGGAAAAACCTGGCCGCGACCCGCGTCCCGAGTTCAAGACCG CCGAGTTCCAGGACGGCGTCGAAGACCTCAAGGACCTGCAACTGGGCATGATCCTCGAAGGCGTGGTCACCAACGTGACCAACTTCGGTGCCTTCGTCGA CATCGGCGTGCATCAGGACGGTCTGGTGCACATTTCCGCGCTGTCGGAGAAGTTCATCAAGGATCCACGCGAAGCGGTGAAGGCCGGTGATGTGGTCAAG GTGAAGGTCATGGAAGTCGATATCCCACGCAAACGCGTCGGCCTGTCGATGCGCATGAGCGATACACCGGGCGAGAAGATCGACGGTGCCCGTGGTGCAC GTCCGGGGTCGGCTCCGCGCCAGTCCCAGAACACCGCGCCGCGCAAGGAAACCCCGACAGCGGCTCCGACCAACAACGCCATGGCGTCGCTGTTTGCCAA CGCCAAGCAGTTGAAGAAACGTTGA
BLASTN Search
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DIAMOND BLASTX Search (DIAMOND is faster than BLASTX)
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| DNA Sequence Downstream of Gene |
TGGAGATCCCGGCCGGCTTGACCGAAAGCGCATTTTTCAAGCTGCTGGGGTGTCGCTTGCACAGCCTGGACACCGGGGTGGCGCAAGTCGCCCTGGCGCT GGAGCCACAGTTGCGCAATCGCGGCGGCAAGCTGCACGGCGGGGCCTTGTTCAGTCTGGTGGACATTGCCATGGGGCTGGCCTGCTCCAGCACCCACGGT TTTGACCAGCAAAGCGCGACCATCGAGTGCAAGATCAACTACATCCGCGCCGTCGCCGACGGTGAAGTGATGTGCACGGCCAGGGTGATCCACCCGGGCC GTCGCACGCTTGTCGTCGAGGCCGACGTGATGCAAGGCGACAAACTGGTCGCAAAAGCACAAGGCACGTTCGCTGTCCTGTAGCCCCCAATCATCAATTT GAGTTAATTTCGGCGCTGTGACTGCAGCGTCGGAGTTTTCTCTGCGCGCGATAGCCAGATTCAGGGAATGAAGTTGGCCTTTCAGTACGAGCCTGTATGG
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| Amino Acid Sequence |
>transcription accessory protein
MDSINSRIAEELGVRPQQVEAAVALLDEGSTVPFIARYRKEVTGSLDDTQLRHLEERLRYLRELDERRISILASIEEQGKLTPALERDIKLADTKTRLED LYLPYKQKRRTKGQIALEAGLGELADGLFNDPTLNPETEAARFIDAEKGVADVKAALEGAKYILMERFAEDAGLLDKLRNYLKQEATLSARVIAGKEEEG AKFRDYFEHDEPLKSMPSHRALAIFRGRNEGILSSALKVGDELPGTMHPCEGMIGQQFGIQNQNRAADKWLGEVVRWTWKVKLYTHLETDLLGELRDGAE TEAINVFAHNLHDLLLAAPAGPRATLGLDPGLRTGCKVAVVDATGKLLDHATVYPHVPHNKWDQTLAVLAALCAKHSVDLIAIGNGTASRETDKLAAELI KKYPAMKMTKVMVSEAGASVYSASELASKEFPDLDVSIRGAVSIARRLQDPLAELVKIDPKSIGVGQYQHDVSQLKLARGLDAVVEDCVNAVGVDVNTAS VALLARISGLNATLAQNIVTHRDEHGAFKTRAALKKVARLGEKTFEQAAGFLRVMNGDNPLDSSAVHPEAYPLVQRIAAETDRDIRSLIGDAAFLKRLDP KKYTDETFGLPTVTDILQELEKPGRDPRPEFKTAEFQDGVEDLKDLQLGMILEGVVTNVTNFGAFVDIGVHQDGLVHISALSEKFIKDPREAVKAGDVVK VKVMEVDIPRKRVGLSMRMSDTPGEKIDGARGARPGSAPRQSQNTAPRKETPTAAPTNNAMASLFANAKQLKKR
BLASTP |
DIAMOND BLASTP (DIAMOND is faster than BLASTP)
Search for conserved domains in this protein at NCBI CDD site
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