Pseudomonas umsongensis UNC430CL58Col, N519_RS0105255
Cytoplasmic
Cytoplasmic Membrane
Periplasmic
Outer Membrane
Extracellular
Unknown
Sequence Data
| Strain | Pseudomonas umsongensis UNC430CL58Col N519DRAFT_scaffold00004.4_C, whole genome shotgun sequence. [Details] | |
| DNA Sequence Upstream of Gene |
CCGCAGCCTCAAGGATGTCGAACCGCTGCGTCAGTACTTCGCTGCGCAGAACCTGCTGGTCTCGACCCAGGCCCAGGCCATCGCCCAAGTGCAATCGCTG AGCCGCAACCTGTCGATCGTGTTCTGGATCATCGCCGGATTGGCCGTGGCGGGAGCGTTCGCGGCGATTTTTGCCGGGGCGCTGGCGGCGGTCGAGCGCA AGCGTCGAGCGTTATCGGTGCTGCGCTTGCTGGGGTTTTCCACGGCAGCGTTGCTGTTGTTTGTGGTGGTGCAGGCGCTGTACAGCGCCGGTCTTGCCGC CCTGTTGAGTGCCGGGCTGTATGGCCTGGCGCAATCGGGCCTGAACCATTTATTTGCGCAGATGCCGGGCGAGTACGCCAGCCATCTGCTGGCGCGTCAC TACGCGTTGGCCCTGGCGGCAGTGCTCGGCGTCAGTGCCGTGGCGGCGCTCTGTGGTGGCTGGCGAGTGGCGCGTATCCAGGCGTGTGAAGGAATCCGAG
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| DNA Sequence for Gene |
>N519_RS0105255
ATGTATAAGTTACTGGGCGCCGCCGTGGCGCTGAGCCTGGCCGGCATGGTCTGGGCTGATGAAGGCACCGACAAGCTGGACAACCCCAAGCCGTTGCCCG ATGACGTCAGCCTGCCGCTGCCGTGCGAAGGGCAGATGGTGTTCCGTTACGTCTACATCCTGGCCCAAGGCAGTCTGGACGACCGTGAGATCAGCCTCGG TTACCCGTTCAGCGAAGGTGAGGCCGGCTATCAGCAGTCGTTCATTTCCGGTTATCGCCGGGACTTCATCAATGGCCAGTTCACCCTCAAGGATCTGCCC AAGGACTGGAGCAAGAGCATCACCCCGTTGATGCCCAAGACCGACGCCAACACCCCGCTCAAACCGATGCTCTATTTCATCGGCAAATACGAAGTCACCG CCCGCCAATACGCGCAGGTCATGGCCCAGGCGCAATCGTTGGCCAGCGGCGAGCCGGCGCCGGCCTGCGAGGCGTTGCAGGCTGAAATTCCGCAAGGCAT GGCCGGGCGTTTACCCAAGGTGAAGCTGTCGCGATTCGAGGCTGAACGCTTCTCGGCGGTGTACAGCGCCTGGCTGATGAAATACCACAAGGATCTGCTG CCGGTGAGCGGTCGCGGCACCTCGGCAGAGGAGGGCGGGCTGGGTTTTGTGCGCTTGCCAACCGAAGTCGAATGGGAATTCGCAGCCCGTGGCGGGCAGG CCGTCAGCCGTCAGGATCTGGAAGGGCGCCTGTTTCCCCGGCGCCTGGACGGCAGCGAAAGCGACGGACCGCTGGCCGATTGGGCGGTCTTCAATCAGGT CGCCGGCGGCACCGGTCAGGCCGCGCGGTTGATGCCGATCGGTACCAAACTGCCAAACCCCATTGGCTTGTTCGACGTGATCGGCAACGCCGCCGAAATG GTCCAGGAGTCCTTCCAGCTGGTGCACGCCGGACGCCGCCAGGGCACCTACGGCGGCTTCGTGGTCAAGGGTGGCAATTACCTGGAAGGCGAGGGCACCT TGTTCACCGGGATGCGCCGCGAGTACTCGCTGTTCGCCGCTGACGGCACCGAGCAAAATAACGAAACCACCGGGTTCCGGGTCGCGATTGGTGCGTTGTC GGCGCCCCGTTCGCGCTACAAGGAACTGTTTGCCCAATGGCAGAAAGAAGGTCGTCTGGCTTCGCTGACCGATGCCATCGACGACGCCCAGGACCCGACC AAACGCCTGGACAGCATCATTGCCGCCAGCGTCGATCCGCGTTTGCAAGCCGAGTTGGGGCTGGTCAACGAAGAGCTCAAGCGCAACGTCTCGCTCATCG CCCAACAGCGCGAGGAAGCGGCCGGCAACCTGATCCAGTCGGCGGCCCTGGTGGCCGAGACCGTCAACAACTACAACATTCGCCTGACCAATTTGCAGAA GAGTCGCCAGCAGGCCGTGGACGCCAAGGACGAGGCCAGCGCCAAGCTGTTCGCCATGGCTATCGACAACGGCCGCAGCGCGCTGGACGGCGCGGTGGCG ATCTACATCGACAACCTGGCGACTGGCACGCGCTACACCGATGCCGTGATCCAGGCGCAGTTTCAACGCATCAAGGAAGAGTTGGAGCGCAAGCCGGTAC TGGGCAAGAGCCTGGTGACGCGCGCGACGTTATTCGTTCGCCATGTCGGTGATTATCGTCAGCAACGACGAGCCGACCCGGCGGCGATATTGAAGGAATT GCTCGCATCGAACGCTCAGCGGTCTTGA
BLASTN Search
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DIAMOND BLASTX Search (DIAMOND is faster than BLASTX)
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| DNA Sequence Downstream of Gene |
TCGTTCGTTGTACAGCGAGCTTGGAAGGGACTCAGGCGGCGATGGGCCGTGCTGAGCTGGTCAAACTTAAACGAGAACACAACTATGCTTTCCTCCCGTA AACCTTTTGCTTCGGTTTCCAAGCGTCATCTGCTGCTGATTGCCGTCGGCTTCAGCACCGTACTGACCGGTTGCGCTACATCGCCGACGTCCAAAGTCGC CTCGAGCACCAAGGTCGAGTACTACCCGAACTGCTACGAGCCGGTGCAGCACCTGCGCGCCACCGATTCGAACATGACCAAATCGGTGGTTACCGGTGCG GCGGTCGGCGCTGTCGGCGGTGCACTGTTGGGCGCCCTGACCGATTCCGAGAACCGTGGCCGCAACGCCGCCATCGGTGCAGCAGGCGGTGCCCTGGCGG GCGGCGCGGTCGGTTACTACAACGAGCGTCAGAAGCAGATCGCCGATGACAACCAGCGCATCGCGTCCTACGCCTCCGACGTCAACAAAAGCGCCGCCGA
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| Amino Acid Sequence |
>type VI secretion protein
MYKLLGAAVALSLAGMVWADEGTDKLDNPKPLPDDVSLPLPCEGQMVFRYVYILAQGSLDDREISLGYPFSEGEAGYQQSFISGYRRDFINGQFTLKDLP KDWSKSITPLMPKTDANTPLKPMLYFIGKYEVTARQYAQVMAQAQSLASGEPAPACEALQAEIPQGMAGRLPKVKLSRFEAERFSAVYSAWLMKYHKDLL PVSGRGTSAEEGGLGFVRLPTEVEWEFAARGGQAVSRQDLEGRLFPRRLDGSESDGPLADWAVFNQVAGGTGQAARLMPIGTKLPNPIGLFDVIGNAAEM VQESFQLVHAGRRQGTYGGFVVKGGNYLEGEGTLFTGMRREYSLFAADGTEQNNETTGFRVAIGALSAPRSRYKELFAQWQKEGRLASLTDAIDDAQDPT KRLDSIIAASVDPRLQAELGLVNEELKRNVSLIAQQREEAAGNLIQSAALVAETVNNYNIRLTNLQKSRQQAVDAKDEASAKLFAMAIDNGRSALDGAVA IYIDNLATGTRYTDAVIQAQFQRIKEELERKPVLGKSLVTRATLFVRHVGDYRQQRRADPAAILKELLASNAQRS
BLASTP |
DIAMOND BLASTP (DIAMOND is faster than BLASTP)
Search for conserved domains in this protein at NCBI CDD site
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