Pseudomonas umsongensis UNC430CL58Col, N519_RS0102420
Cytoplasmic
Cytoplasmic Membrane
Periplasmic
Outer Membrane
Extracellular
Unknown
Sequence Data
| Strain | Pseudomonas umsongensis UNC430CL58Col N519DRAFT_scaffold00003.3_C, whole genome shotgun sequence. [Details] | |
| DNA Sequence Upstream of Gene |
AACGCCTGGCGATTGCCCGAATGGTGTTGGCCGAGCCCAAAGTGGTGATCCTCGACGAAGCCACGTCCGCACTGGACGCGGCCACTGAGTACAACCTGCA CCAGGCGCTGGCGCGGTTCTTGAGCCACCGCACCACGTTGATCATTGCGCACCGATTGTCGGCCGTGAAGCAGGCCGATCGAGTGTTGGTGTTCGATGGC GGGCAGGTTGCCGAGGATGGCGACCATCAGCAGTTGATTGCCGATGGTGGTTTGTACGCCAAGCTTTATGGGCATTTGCAGCAAATTCAACGACCTTGAA CTTTGTACGGTTTTCTGCGCTTAGTGTTTGAGCGGTCCCGAGGAATTCAATTTTGGCGTTTTTTGCGCTCTGTCTGGCCAGACAATCGGATTGCAGTGGT GTGCTCGATGATTCGAAGTGTCGGAAATTAGCCTAGTCTGTGCTGTCAGGTGCGGGATTTATTTGGGTGTTCATCCGGCAATGCTTATGCAAGGGACCTC
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| DNA Sequence for Gene |
>N519_RS0102420
ATGAAGCAAAAACGGACTCTCGGAACGCCACGGCTGTTGGGCATCGTCTGGCCATTTATCGCCGTTGTGTTGTTTCAGGCATTGTTGGGCGGCGTCAGTC TTTACGTTCTTTCAGCGGTTCGTGGCTACGTCGGCGGTGAGAGCCTGTGGTCCAAGGGCCAGAAAGACGCCATCTATTACCTCAATCTCTACGCCGACAG TCGCGACGAGACGATTTTTCTCAAATACCAGAACGCGATTGCCGTGCCTCAGGGCGGCCATGAGTTGCGTATGGCGCTGGATCATCAGCCACCGAATATC GAGGCCGCGCGGCTCGCGATTCTCAAGGGCGGCAATCACCCGGACGACGTCCCCAGCCTGATTTGGCTGTACCTCAATTTCCGGCATTTCAGTTACCTGG AAAAAGCCATCGAACTCTGGACGATCGGTGACGAGTACCTGGTGCGGCTCGATGACGTCGCGCGGGAAATGCATCAGGGTATCGTCGATAACCAGGCCAC CGATGCCGATATCAAGCACTGGAAGGCGCAGATTTTGGCCATCAACGATGGCGTGACGCCCCCTGCCAAAGCGTTCAGCGATGCCTTGGGCGAGGGCTCG CGCATGATTCTCCGGCTGCTGCTGGCGACGAACCTCGCCACAGCGCTGGGCCTGATCGTGCTGGCCTTGCTGCGTACCCACAAACTGCTCGAACAACGCC ATGCCTTCGCCGATGCCTTGCAGTTGGAGAAAGACCGGGCGCAGATCACCCTGCAATCGATTGGCGACGGGGTGATCACCACCGACGTCGAGGGCGCGAT TGCCTACATGAACCCGGCCGCCGAGGCCTTGACTCACTGGAAGGCCGAACAGGCGACGGGGTTGCCATTGGCGGCGCTGTTCAATCTACTGGACGAGAAC GCTCAGGCCGACGGTTTTACCTTGATCGAACACATTTTGAGCGGCCAGCTCAGTGGCGGTAGCGAACATTCCAAACTGATCCAGCGACTGGATGGCAGCA CGGTTTCGGTCACCTTGGTCGGTGCGCCGATCCGCAATGCGGGCAAGGTCAGTGGCACCGTGCTGGTGCTGCATGACATGACCCAAGAGCGGCAGTACAT CGCCAATCTGTCCTGGCAGGCGACCCATGACGCCTTGACCGGGCTGGCCAACCGCCGCGAATTCGAATATCGCCTGGAACAGGCCCTGCATGGCCTGATG CGACAAGCGGGACGTCACGCCTTGATGTTCCTCGATCTGGATCAATTCAAACTGGTCAACGACACCTGCGGTCATGCTGCCGGCGATGAGTTGTTGCGGC ATATTTGTGCGTTGCTGCAATCAGGATTGCGCGAAGGCGACACCCTGGCCCGATTGGGGGGTGACGAGTTCGGCATTCTGTTGGAAAACTGTGCGCCGGA AGCGGCTGAGAAAATTGCCGAAGTCCTGCGCCAGACTGTGCAGAACCTGCATTTTGTCTGGAAAGGCCGGCCGTTCGTGACCACGGTGAGCATTGGTCTG GTGCACGTCACTCAGAGTCCGGCCACCCTCGAAGCCTCGCTGCGAGCCGCTGATATGGCCTGTTACATGGCCAAGGAAAAGGGCCGCAACCGGGTTCAGG TCTATCACGCCGACGATTCGGAACTGTCCCTGCGCTATGGTGAGATGGCCTGGGTGCAACGCCTGCACATGGCGTTGGAGGAGGACCGCTTTTGCCTCTA CTCCCAGGAAATCGCGCCTCTGGGTCTTGGCGAGCGGGACGGCGGACATATCGAAATCCTGCTGCGCCTGCATGACGAAGCCGGGCGCATGATTCTACCG GACAGTTTCATTCCGGCCGCCGAGCGTTATGGTTTGATGACGTCGCTTGACCGCTGGGTGGTGGAGAACGTTTTCAAGGTCATTGCCCAGGCCATCGCCC AAGAGGGCGAAGAGCCGCTGGCCATGTGTGCGATAAATCTGTCAGGTATTACTATCGGAGATGAGGCGTTTCTGGACTTCCTTCGTGAACAGTTTGTTGC ATATTCAATTCCACCTGAAATGATTTGTTTTGAAATTACAGAAACCAGTGCGATTTCCAATTTGCCTAGCGCAATTAGATTTATTAATGAACTCAAAGGC TTAGGTTGCCACTTCTCATTAGATGACTTCTGCGCCGGTATGTCCTCATTCGCTTACTTGAAACATTTACCTGTAGACTTCCTGAAGATCGACGGGAGTT TCGTAAAGGATATGCTGGACGACCCGATTAACCGCGCCATGGTCGAAGTGATCAATCACATCGGGCATGTCATGGGTAAGCGTACGATTGCCGAGTTCGT TGAAACACCTCAGATCGAGCAGGCATTGCTGGAGATCGGGGTGGATTACGCTCAAGGGTATCTGATTGAACGCCCGCATCTGTTTACCTGCGACAGTTTA CAAAGTCGTCCTGCCAGGCCACGGCCTTTGTTATTCAAGGCGCCCGGCACGTTCCGTTGA
BLASTN Search
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DIAMOND BLASTX Search (DIAMOND is faster than BLASTX)
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| DNA Sequence Downstream of Gene |
AATCTCTTGTTGATCTGAAAATCACAATCAAAAGGAGCGCGACAGTGATCGACACATTCAACAGAACCGGACCCCTCATGGAAGCTGCAAGTTACCCCGC CTGGGCTCAGCAATTGATTCAGGATTGCAGCGAGAGCAAGCGCCGCGTCGTCGAACATGAACTGTACCAGCGGATGCGCGATAACAAGCTCAGCGCAAAA ACCATGCGTCAGTACCTCATTGGTGGCTGGCCGGTGGTCGAACAGTTCGCCTTATACATGGCACAGAACCTGGCCAAGACCCGTTTTGCACGCCACCCTG GCGAAGACATGGCGCGTCGCTGGCTGATGCGCAATATTCGCGTCGAACTGAACCATGCCGATTACTGGGTGCACTGGAGCCGTGCTCACGGCATCAGCCT GGAAGATCTGCAGGCGCAACAGGTTGCCCCTGAACTTCACGCCTTGAGTCACTGGTGCTGGCACACCAGTTCGTCGGACTCGCTGATCGTGGCTATCGCC
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| Amino Acid Sequence |
>membrane protein
MKQKRTLGTPRLLGIVWPFIAVVLFQALLGGVSLYVLSAVRGYVGGESLWSKGQKDAIYYLNLYADSRDETIFLKYQNAIAVPQGGHELRMALDHQPPNI EAARLAILKGGNHPDDVPSLIWLYLNFRHFSYLEKAIELWTIGDEYLVRLDDVAREMHQGIVDNQATDADIKHWKAQILAINDGVTPPAKAFSDALGEGS RMILRLLLATNLATALGLIVLALLRTHKLLEQRHAFADALQLEKDRAQITLQSIGDGVITTDVEGAIAYMNPAAEALTHWKAEQATGLPLAALFNLLDEN AQADGFTLIEHILSGQLSGGSEHSKLIQRLDGSTVSVTLVGAPIRNAGKVSGTVLVLHDMTQERQYIANLSWQATHDALTGLANRREFEYRLEQALHGLM RQAGRHALMFLDLDQFKLVNDTCGHAAGDELLRHICALLQSGLREGDTLARLGGDEFGILLENCAPEAAEKIAEVLRQTVQNLHFVWKGRPFVTTVSIGL VHVTQSPATLEASLRAADMACYMAKEKGRNRVQVYHADDSELSLRYGEMAWVQRLHMALEEDRFCLYSQEIAPLGLGERDGGHIEILLRLHDEAGRMILP DSFIPAAERYGLMTSLDRWVVENVFKVIAQAIAQEGEEPLAMCAINLSGITIGDEAFLDFLREQFVAYSIPPEMICFEITETSAISNLPSAIRFINELKG LGCHFSLDDFCAGMSSFAYLKHLPVDFLKIDGSFVKDMLDDPINRAMVEVINHIGHVMGKRTIAEFVETPQIEQALLEIGVDYAQGYLIERPHLFTCDSL QSRPARPRPLLFKAPGTFR
BLASTP |
DIAMOND BLASTP (DIAMOND is faster than BLASTP)
Search for conserved domains in this protein at NCBI CDD site
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