Strain | Pseudomonas aeruginosa PACS2 chromosome, whole genome shotgun sequence, complete genome. [Details] | |
DNA Sequence Upstream of Gene |
TCATTCTCGATTTCGGCAGCGACATCAAAGGCGACAGCCTGCTCGTCGGCTACGAAAACAAGATCGAAATCATGTCCTACAGCCACAACGTGGCGATGCA GGTCACCAACGACGTCAGCAACTCGGAGCGCACCTCCGGCAAACCCCACGTCGGCGAATTCACCCTCACCAAGTTCATCGACACCTCGACCCCGACCCTC AACGAGTATTGCTGCGCCGGCAAGCCGATCGCCGAGGCGACCATCACCATCGGCCGCAACGCCGCCGAGGGCAACGGGCAGATCATGCCCTTCATCGTCT ACACCCTGAACAACGTGGTGCTCTCCAACGTCAGCGTCAGCGGCGGCGCCGGCGGCAAGCCGGTGGAGACCCTGTCGCTGAACTTCACCAAGATCAAGTG GGAGCTGACCGCGCAGAAGGACGACGGCACCAAGGAAGGCACGGCCGCCTCGACCTGGGACCTGGCCGCCAACCAGCTGGTCAAGTGACCGGGCGCCGAC
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DNA Sequence for Gene |
>A0K_RS15030
ATGTCCGGAGCCCTGCCGCCGCTGTTCGAGCGCCTCAGCGCCGAGGCCGACGAACGTCCCGCGTTCGACGACCGGGCGCTGGCCGAGTCGGTCCGCGGCG AGCTGCTGCGCCTGCTCAACACACGGCGCCCGGCGAATGCGCGCAGCGGCATCCTCGCCTACGGGCTCGCCGACTGGACCGCCGTGCAACGCCTGCGCGC CGAGGACCGGCGCCAGCTGGCGCGCGAGGTGCGGGCGGCGGTCGAGCATTTCGAGCCGCGCCTGCAACTGGCCGAGGTCGAGGTCGAACCTGACCCGGGC AATCCGCAGCGCCTGCGTATCCAGCTCGGCGGCAGCCTGCGCAGCGGGTCGCGCCTGACGCCTGCGCTATTCGTCATCGAACAGGGCAGCGATGGCCTCG AGGTGCGCCATGAGCGATTCGATTGA
BLASTN Search
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DIAMOND BLASTX Search (DIAMOND is faster than BLASTX)
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DNA Sequence Downstream of Gene |
TGCCGATCTGCTCGACTACTACCAGCGCGAGCTGACCTGGCTACGGCACGCCGGCGGCGCCTTCGCCGAGCGCTATCCGAAGGTCGCCCGGCGCCTGCAA CTGGCTCCCGGCGAATGCCCCGACCCGCACGTCGAGCGTCTGCTGGAAGGTTTCTCGCTGCTCACCGCGCGCCTGCAACGGCGCCTCGACGACGACTACG CAGAGTTCAGCGACGCCCTCCTCGAACAGCTCTACCCCCTGGCGCTGCGCCCGCTGCCGTCCTGCGCGATCGTCCAGTTCGAACCGGACCCGACCCAGGG CAGCCTCGCCGAGGGCTACCGGCTGCCGCGCGACACCGCGCTGTTCGTCACCACCCGTGGCGGCGACAGCGTGCATTTCCGTAGCAGCGCCGAGGCGACC CTGTGGCCGCTGGCGATCGACGAGGCGAACCTGCTCGGCGGCGAGGAGGCGCAAGCCCTGACCGGAGTCGGCGCCGCCCGCTCGGCGTTGCGCCTGAGCC
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Amino Acid Sequence |
>type VI secretion protein
MSGALPPLFERLSAEADERPAFDDRALAESVRGELLRLLNTRRPANARSGILAYGLADWTAVQRLRAEDRRQLAREVRAAVEHFEPRLQLAEVEVEPDPG NPQRLRIQLGGSLRSGSRLTPALFVIEQGSDGLEVRHERFD
BLASTP |
DIAMOND BLASTP (DIAMOND is faster than BLASTP)
Search for conserved domains in this protein at NCBI CDD site
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