Pseudomonas putida KT2440, PP_4959 (cfcR)
Cytoplasmic
Cytoplasmic Membrane
Periplasmic
Outer Membrane
Extracellular
Unknown
Sequence Data
| Strain | Pseudomonas putida KT2440 chromosome, complete genome. [Details] | |
| DNA Sequence Upstream of Gene |
GTTGAAGAAATCGTTGAAGGCATCAAGCACGGCGTGCGCAAGGTCAACATCGATACCGACCTGCGTCTGGCCTCTACCGGTGCCATGCGCCGTCTGATGG CGCAGAACCCGAGCGAGTTCGACCCACGCAAGTTCTTCGGTGAAACCATCAAGGCCATGCGCGACGTGTGCATCGCGCGTTACGAAGCCTTCGGCACCGC GGGCAATGCCTCGAAGATCAAGCCGATCTCTCTGGAAGGCATGTACCAGCGCTACCTGAAAGGTGAACTGGCCGCCAAGGTCAACTGATCGACAGGTAAC CCTGAAAAACCCGCAGCGATGCGGGTTTTTTTATGGGAGATGGAAACCTGTACATAATTCCGGCAGACCGACCGTTAGTCGGCTACCGTACAGTTTGATC ATTGATAGCGTTCTGATTGCATTGCGTGTTGCAGCCTCAGGTCTAGAGTACTAATGGATCCAACCGTATTTTGAAGTCGGTCACATAACAGAGAAGCAGC
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| DNA Sequence for Gene |
>PP_4959
|cfcR
ATGGATGGCGCTTACCCTCAACAGCAGCCACTGGATGGCAGCTCAGTTCTTCTGGTGGTAGACGACTACCCCGAGAACCTCATCAGCATGCGGGCCTTGC TGGCCCGGCAGGATTGGCAAGTATTGACGGCAAGCTCTGGGATAGAAGCCTTGAGCGCGTTGCTTGAATACGAAGTCGACCTGGTGTTGATGGATGTACA GATGCCGGAAATGGACGGCTTTGAAGTCGCCCGGCTGATGCGCGGCAATCAGCGTACCCGACTGACCCCGATCATTTTCCTCACCGCCAACGAAAAGTCC GAAGCGGCCGTGCTCAAAGGCTACGCCAGCGGCGCCGTGGACTACATGTTCAAACCGTTCGACCCACAAATCCTCAAGCCCAAGGTCCAGGCGCTGCTCG ACCAGCAGCGCAACCGGCGCATGCTGCAGCAGCTGAGTCGTGAGCTGGAGACGGCCAGGGCCTTCAATGCGTCCATCCTGGAAAATGCCGCCGAAGGCAT TCTGGTGGTTGATGCCCATGGCATCATCCGTTTTGCCAATCCGGCCATTTCCCGTTTGCTGGCGGCACCGGTGCAACACCTGCAGGGCACCCAATTGCTC GACGTTGTGCAACTGACCAGTACCAGCCTGTGGCGCGAGTCGGACTTCTACAAGGCCTACCAGGGGCGGCAGATCTACCGCGTACACGATGCCCAACTGC GTACCCAAGGCGGTGAGCTTGTGCCGGTGGCGCTGTCCTGTGCGCCGTTGCCGGCCGATCAACAGGCCATGGTGGTGACCGTGCTGGACATGTCGGCAGT GCGTAACTTGCACCAGCAGCTGGAATACCAGGCCATTACTGACCCGCTAACCGGCCTGCTCAACCGCCGTGGTTTCTACCAGGCGGCTGAAGGTGCACTG TTGCGCAACGAGCGCTCTGACAAGGCGCAGGCGCTGATGTACATGGACCTGGATGGCTTCAAGCGCATCAACGACTCGCTCGGCCACGACGCGGGCGACC GGGTGTTGCGCTGGGTGGCCGAGCAGCTCAAGGACTGCCTGGGCAGTGAGGCCTTGCTGGCGCGTATGGGCGGTGATGAGTTCACTGCACTGTTTGACAG CTTGCCCTACCCGGAGCAGGCCGGGCGTTTTGCCGAACGGTTGCTCGAACGTGTTTCCATCAGCCATGAGGTAGACGGGCTCGATGTGTGCCTTGGGGTC AGCATCGGCATTGCCACCTACCCGGACTGTGGCGCCAATGTCGAAGGCCTGCTGCGTTCGGCCGATGCAGCAATGTACGCAGCCAAGCAAGCGGGGCGTC AGCAATACCGCTTCTACGACCAGGAACTCAACGGACGGGCGCGCTCGCGATTGATGCTCGAGGACAGCGTGCGCATGGCCATCGAGCAGCAGGACTTTAC CTTGGTGTACCAGCCACAGGTCGCCTTCCACGATGGCCGCCTGCGTGGTTTCGAGGCCTTGCTGCGCTGGCAGCACCCCAGCGTTGGCGATGTGCCGCCG GGGCTGTTCATCCCGTTGCTGGAAGAAGCACGGCTGATCAACCGCCTGGCCAGCTGGATCTACCGCCAGGGGGCCGCCCAGCGGCAGGCCTGGTACGACC GGTTTCCGCCGGACCTTGTGCTCGGCATCAGCCTGAGCCGCGCGCAGTTCGTCATGCCTGGCCTGGTCGAAGAGCTGCAACGGGTCATCCAGCTTTACCA GCTTGTCCCGACGCAGTTGGAGGTGGAAGTGGCGGAAACGTCGCTGATGTATAACATCGACGCGGCCGTCAAACAGATACACCGCTTGCGTGAGCTGGGC GTGAGGGTGGCCCTGGATGACTTCGGTGCGGGTGACTGTTCGTTGCGCATGCTGCGCGACCTGCCTATCGACACCCTCAAGCTTGACCGTCATCTGGTGG CACGTCTGCCCGATTCGACGGTAGATGCTGCGTTGGTTCGCAGCGTGATCGGCCTGTGCGCCGACTACCGTATCACGGTGATCGCCGAGGGTGTGGAGAC CCCGGCGCAGGCCGCCTGGCTAAAGGCCAATGGTTGCGAATACGTTCAGGGTTTCCTGGTGGCTTATCCGATGACCGCGACTGACGCTAGCGGCTTCCCG GCAATTTTCTCCTGGCCAGGGCCGTGA
BLASTN Search
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DIAMOND BLASTX Search (DIAMOND is faster than BLASTX)
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| DNA Sequence Downstream of Gene |
TTGGCTAGAATCGGCATTCGTTACGCCGAATACAGCGCCATGACCGTACTACGTTACTTGCAAGCCTACCCCCCGCACCTGCAGGCGCAGGTGCGGCAGA TGATCGACAGCGACCGCCTGGGTGAATACCTGCAGCGCCGTTACCCTGACCGCCATGACGTGCAAAGCGACAAGGCGCTGTATGGCTATGCCCAGGATCT GCGCCAACAGTACCTGCGAAGTGCGCCAAACCTGGACAAGGTACTGTTCGACAGCCGCCTCGATCTGACGCATCGGGCCCTGGGCTTGAACACGGCGGTG TCGCGGGTGCAGGGTGGCAAGCTCAAGGCGAAGAAGGAAATCCGCATTGCCTCGCTGTTCAAGGAGGCCGCGCCACAGTTCTTGCGCATGATTGTTGTGC ACGAGTTGGCGCACCTGCGCGAGCGAGATCACAACAAAGCGTTCTACCAGCTCTGCCAGCACATGGAGCCGGACTATCACCAACTGGAATTCGACCTGCG
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| Amino Acid Sequence |
>CfcR
MDGAYPQQQPLDGSSVLLVVDDYPENLISMRALLARQDWQVLTASSGIEALSALLEYEVDLVLMDVQMPEMDGFEVARLMRGNQRTRLTPIIFLTANEKS EAAVLKGYASGAVDYMFKPFDPQILKPKVQALLDQQRNRRMLQQLSRELETARAFNASILENAAEGILVVDAHGIIRFANPAISRLLAAPVQHLQGTQLL DVVQLTSTSLWRESDFYKAYQGRQIYRVHDAQLRTQGGELVPVALSCAPLPADQQAMVVTVLDMSAVRNLHQQLEYQAITDPLTGLLNRRGFYQAAEGAL LRNERSDKAQALMYMDLDGFKRINDSLGHDAGDRVLRWVAEQLKDCLGSEALLARMGGDEFTALFDSLPYPEQAGRFAERLLERVSISHEVDGLDVCLGV SIGIATYPDCGANVEGLLRSADAAMYAAKQAGRQQYRFYDQELNGRARSRLMLEDSVRMAIEQQDFTLVYQPQVAFHDGRLRGFEALLRWQHPSVGDVPP GLFIPLLEEARLINRLASWIYRQGAAQRQAWYDRFPPDLVLGISLSRAQFVMPGLVEELQRVIQLYQLVPTQLEVEVAETSLMYNIDAAVKQIHRLRELG VRVALDDFGAGDCSLRMLRDLPIDTLKLDRHLVARLPDSTVDAALVRSVIGLCADYRITVIAEGVETPAQAAWLKANGCEYVQGFLVAYPMTATDASGFP AIFSWPGP
BLASTP |
DIAMOND BLASTP (DIAMOND is faster than BLASTP)
Search for conserved domains in this protein at NCBI CDD site
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