Pseudomonas putida KT2440, PP_3106 (vgrG1)
Cytoplasmic
Cytoplasmic Membrane
Periplasmic
Outer Membrane
Extracellular
Unknown
Sequence Data
| Strain | Pseudomonas putida KT2440 chromosome, complete genome. [Details] | |
| DNA Sequence Upstream of Gene |
AATGTTCGCATCGCTGCTGACACTGGGTGTTACCTACAAAAAAATGAAGTTGGGAGCGGCGACTTCTTTGATGTTAGGGCTCGCGCCCGTCGTGCTGGTG TTGTTGACCTATGCAATGGCTTATTACTGGCGCAGTAAAAGTGATATTCTCCATTTTAAAGGGCAGCGCGTGGAATCCATCGAGCCGCCACAGAAAGTTC AGTGGTGGCAGGCGGGTTTGGCGGCGGGCTTGAGCAGCGTGATCTATCCGCTGATGAAAAGCCATGACGTGCCGGCCACCGGGTTGATCTACTTCTTTGC GCTAATGTCCGTGTTCATGGTGTTTTACAATCGTGACAAGATCAGTGCACTCAGAGACCTGAAAGTGCGCGAAGCGAAGGAAAACCGTCAATACACATTC ATGGATATTGAAACTATTCAGAGCATGCGTGCTGCCTCGTGGTTGGGCAGGCTTTTCGCCGTACGGGCGCGCTGATGTTCACCGCTACAGGGAGTAAATT
|
|
| DNA Sequence for Gene |
>PP_3106
|vgrG1
ATGCTAACTGACGTTCTTTCCATGCTCGCGCCGCAAAACAGGCGATTGTTCAAGCTGAATATCCTGACACAAACAGCCAACGATGAGTTTTTGCTGGAGC ACTTTTCCGGCACTGAAGAGCTTTCCAAACTCTATGAATTCGATCTGGCCTTGCTCAGCCAACAGAGCGATGTAAAGCTCAAGTCACTGATTGGCAGCCA GGCCACGGTAGAAATAGAGTTATCCAACGGCTCTTTCCGCCACATTAACGGCTATGTTCAGCGGTTTAGCACCCAAGGCAGCGACGGCGGCTATGTGCGT TATGCAGCCGTGCTAGGGCCGTGGCTGTGGATGCTGACTTGCCGTTTCGATACACGCATTTTTCAAGAAAAATCGGTCCAGGCTGTTGTCAGTGAAGTGT TCGCCGGATTTGGCACGCTGGCCAAGTACGAATTTCGTGTAAGCAAGCCGCTCAAATCGCACAGCTACATTACCCAGTACCGCGAGAGCGATTTCAACTT TGTGCAGCGCTTGCTTGAGAGCGAAGGGCTTTTCTACTACTTCGAGCACACGGCCGACTCCCACCTGATGGTCATCACCGATGACTCCAGCACCTTGTTG CCGCTGCCCGAACAGCCGCAGATTCGCTACCACTCCGCGTCGGTTACCGAAACCGCTGATTCCATTACTCAGTGGCAGTCAACGCGGCAGCTGCAATCCG GTCAAATTGCCGTTCGCACGTTCGACTATCGCCAACCGCGCAACTTCCTACCTGTGACCATGCAAAGCTTGAATCAACAGGGCGATGTGGACAGGTTCGA GATTTATGATTTCCCGGGCCAGTACACCCATGGCAGCTACGAAGATGGCGAAGCCATCGTACGCAACCGTATCGAAGCGCTCGAGTTGATGGGCAAGACC TTCTACGGCGAGAGCAATTGCCGGGCCATGAAGCCGGGTTACACTTTTGAGTTGACCCAGCATTATCTGCACGACACCGGTGCCGCCGAGAACCGTAAGT TTTTGTTGCTGAGCGTGGAGCATCGCGGCAGCAACAACTACATGACGGGCGACCAGGCCGGTTACGTCAACCGATTCGTGTGCGTGCGTAAAAAAATCGC ATACCGCCCGCAGTTGAACACCCGCAAGCCTTTGATCAACGGCCCGCAGACCGCCATCGTTGTCGGCCCCCCAGGCGAGGAAATCTTCACCGACGAACTG GGCCGGGTAAAGCTTCAGTTTCACTGGGATCGCCAGGGGCAGTTCAACGATCAAAGCTCCTGCTGGGTACGTGTCGCCCAGTCCGGTGCCAGCGGTGGCT TCGGCAGCATCCAGATTCCGCGCGTAGGCGACGAAGTGGTGGTGGTGTTCCTGGACGGCAACCCGGACCGGCCGCTGATCATGGGCAGCCTGTACAACAG CACCAACACCCCGCCATGGTCGCTGCCGGCGAACAAGACCCAGAGTGGGTTCCTGACGCGGTCGATGAAGGGCGACGGCGGTACCGCCAACTTCTTCCGC TTCGAGGACAAGGCCGGCGCCGAGCAGATCATCATGCATGCCGAGCGCAACATGGATACCGAGATCGAGCTGGATGAGACCCACGATGTGGGGAATAACC GCTCGATTACTGTTGGTGGTACGCATACCGAAACGGTCAAGAAAGACACCGTGGTGCAGGTGACCGAGGGTTCCTACACCCTGCAGGTCGACAACCAGTT CATCCAGGTGGCCGCCAAGCAGCACATCATCCTGCAGGTGGGCGACAGCAGCATCACGCTGACCCCGGAAGGCATCGAGATCAAAGGCAAGGTCATCGTG ACCACCAGTACCGACACCACCCAGATCACTGGCGCCGCAGTGCGGATCAACGACTGA
BLASTN Search
|
DIAMOND BLASTX Search (DIAMOND is faster than BLASTX)
|
|
| DNA Sequence Downstream of Gene |
GGCAAGGTTCATGTACAAGCCCTCGATCTACGACCGCATCTCTGCCAGGCGCGAAGCGCAAGAGGAGTCTGCGCGGCTGGCCAGTCTGGCGGAAGCTGCT CATGTGCCCGTGGCTGTGCCCGAGCCGGAACCGCTGCCAGCCGTGTTGCAGGATGTCGCCAGCGCTTTCACCTTCGCAGGGTTCTCCTTGCAGTTTCCGC TCGGCTTTCGTTTTCGCGACATCCAGACCACCCTCGAGCATGAAGGCGAGCCGGTCAGCCTCAGCATCCGCCGCCGTGATGTACGCGCCAGGCAGCCGCT GGAGCAACTGTTCCAGAGCGCAGTCGAGGCTTTGCGCGAATTGAACCCGCAACTGCGCGTGATTCGCCAACGTGACTGCCTCCTGGCTGGGAACCCGGCC AAGGTCGTGGACTTTCACTTCAATGCCGGCCACGAGCCTCGGCACGGTCGCCTGGTCGGCGCACTGGTGCCCATCGCCGGCAGCGATTCGCTGCAATGGC
|
|
| Amino Acid Sequence |
>VgrG1
MLTDVLSMLAPQNRRLFKLNILTQTANDEFLLEHFSGTEELSKLYEFDLALLSQQSDVKLKSLIGSQATVEIELSNGSFRHINGYVQRFSTQGSDGGYVR YAAVLGPWLWMLTCRFDTRIFQEKSVQAVVSEVFAGFGTLAKYEFRVSKPLKSHSYITQYRESDFNFVQRLLESEGLFYYFEHTADSHLMVITDDSSTLL PLPEQPQIRYHSASVTETADSITQWQSTRQLQSGQIAVRTFDYRQPRNFLPVTMQSLNQQGDVDRFEIYDFPGQYTHGSYEDGEAIVRNRIEALELMGKT FYGESNCRAMKPGYTFELTQHYLHDTGAAENRKFLLLSVEHRGSNNYMTGDQAGYVNRFVCVRKKIAYRPQLNTRKPLINGPQTAIVVGPPGEEIFTDEL GRVKLQFHWDRQGQFNDQSSCWVRVAQSGASGGFGSIQIPRVGDEVVVVFLDGNPDRPLIMGSLYNSTNTPPWSLPANKTQSGFLTRSMKGDGGTANFFR FEDKAGAEQIIMHAERNMDTEIELDETHDVGNNRSITVGGTHTETVKKDTVVQVTEGSYTLQVDNQFIQVAAKQHIILQVGDSSITLTPEGIEIKGKVIV TTSTDTTQITGAAVRIND
BLASTP |
DIAMOND BLASTP (DIAMOND is faster than BLASTP)
Search for conserved domains in this protein at NCBI CDD site
|