Pseudomonas putida KT2440, PP_3097 (tssF1)
Cytoplasmic
Cytoplasmic Membrane
Periplasmic
Outer Membrane
Extracellular
Unknown
Sequence Data
| Strain | Pseudomonas putida KT2440 chromosome, complete genome. [Details] | |
| DNA Sequence Upstream of Gene |
TGTGTACAGGGATGACACATGAGTAACCAGGCCCGCCTGCTGCCCTCGCTGCTCGACCGACTGCTGGACGATCGTCCCTACCAGTCGGCCGAGCCCGCAG CGCAGCGCACCTGCTCGCTGGCCGAGTACAAGGCCAGCATCGTCCGCGACCTCGAAGTCCTGGTGAACACCCGCCAGTCCCTGGTCGCCGAAGAGCTCGA CGGTTTCAGCCAGCTCGGTGGTTCCATCCTTGAATACGGCATGCCGGACTTCATCAGCCGCAGCGTGCTCGACCCGCACGATCGTCGCCTGATCCAGCAA CAGCTGGAGCGGGCGATCAGCACCGGAGACCGGCGCTTTCGCCGGGTCCGTGTTCAGCTGTTGGCCCAGCAGAACGGCCACCGCATGTTGACCTTCCGCG TGGACGCCGTGTTGCGTCTGCAGGACATCAGCCGCCAGGTGTCATTCGACGCCGTGCTGCAGGTCAACACCCAGGAATACAAAGTGCAGAACCTCAACTG
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| DNA Sequence for Gene |
>PP_3097
|tssF1
ATGCTCGACGAACTGCTGCCCTACTACGAAAAGGAACTGTCGCACCTGCGCTTTCTCGGCCAAGAGTTTGCTGCGCAGTACCCGAAGATCGCTTCGCGGT TGCTGATCGAGGGCGACAACTGCGAAGACCCGCACACCGAGCGCCTGATCGAGGCGTTCTCGTTCCTGTCTGCGCGGGTGCACAAGAAGCTCGATGACGA GTTTCCGGAAATCGTCGAATCCTTCCTCGAGGTACTGTACCCCCACTACCTGCGCCCTACTCCGTCGATGTCGATTGTCGAACTGAGCCTGGGCAGGCAC GAAAAAGTCACCGAAGCCTACCGCGTCGCGCGCCATACCGAGATGCATGCCAATCCCGTGGAAGGCGTGGTGTGCAAGTTCCGCACCTGCTACCCGGTAG AGCTGTGGCCGATTGCCGTGCAGCAGGCCTCGTTCACAGAAATGGAACGCTCGGCCTTCAACGGGCACAGCGCCGACCTGGTCGCTCGTCTGCGCATCCG CCTGGCAGCCACTGGCGATGCCCTGTTCGGGCAGATGGACATGAACCGCCTGCGGTTCTTCCTCGACGGCGAAGCGACCCTGATGCTGCAGCTGTACGAA CTGCTGTTCAACAACCTCGCCAAGGCCACGCTGAGCTTCGACGACCAGGGCCGCAGCCGCGAGGTGGCGCTGCCGGCCGATGCCCTGAAAACCGTGGGCT ATGCCCGTGACGAAGGCCTGGTGGATTACTCCGAACGCTCATTCCTGGGCTACCGCCTGCTGCACGAGTATTTCACCTTCCCTGACAAGTTCATGTTCTT CGACCTCAGTGGATTTGCCCGCATCCTGCAGGGCAAGGCCATCGAGCAGGTAGAGGTCAACTTCTATTTCTCCGACTACGACCTCAGCGAGCGCCTGGCG CGGCTGACCCAGAACATCGGGCGCAACAACTTCAAGCTCAACTGCACGCCGATCATCAACCTGTTCCGCCAGCAGGCCGAGCCAATCAAGCTGACCCACA CCCAGCACGAATACCAGGTCACCCCTGACACACGGCTGCACAACGCTGCAGAAGTGGTATCGATCGACCGGGTACGGCGGGTGCGCAAACTCGGCGGTAT CGACCAGGTCGCCACCTGCCAGCCGTTTTTCGAACCCCGGGGCGAGCAAGACCCACACAGCAGCTTCTGGGTTGCGCGCCGGCGAAACCAGGGTGACGCC ACTGCCATGAGCATCCGCGTGGTCGACCGCGATCTGGAACTGATCGACGCCAGCAGCGACACCCTCAGTATCGGCCTTACCTGCAGCAACCGCGACGTGC CGCTGATGCTGCCGTTCGGTGGCGAACGGGGCGATTTCACCATTCCCGCCAACTCGGTGATCAAGGATATCCGCTGCCTGCGCAAGCCCACCGCCACGGT GCGTGTGCCCTTGGGCAAGGGCCTGATCTGGCGGTTGATCGCCCACCTGTCGCTGAACCATCTGTCGCTGGTCAGCCAGGGCCGCGAAGTGCTGCTGGAG CTGTTGTCGCTGTACAACTACCGCAATGTCTCCGCCATTCGCAAACAGATCAACGGCATCAAGGCGATCAGCAGCGAGCCGGTGGTCGCGCGCATCGGCC ACCCGCGGCCAAATTTCGTGCGCGGCGTCGGCATCACCCTGACCCTGGACGAAAGCCAGTTCATCGGCAGCGGCGTGTTTCTGTTCGGCAGGGTGCTGGA CCACTTCTTCGGCCAGTACTGCTCGATGAACAGTTTCACCCAACTGACCCTGCGCACCCAACAACGAGAAAAGAGAGTCGTACAATGGCCAGCACGCACC GGCGATCAGCCCCTGGTCTGA
BLASTN Search
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DIAMOND BLASTX Search (DIAMOND is faster than BLASTX)
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| DNA Sequence Downstream of Gene |
TCGATCAGGCCCGAGCCGAGCCGCACCGATTCGAATTCTTTCAATTGGTGCGCCTGCTCCGCCTGCACTACAGCCGCACCGGGCGCATGGACCTGGCAAC CCGGCCGCACGAAGACCCGCTGCGTTTTCGTACCCAGCTGTCGCTGGCGTTCCCGGCCAGCGAGGTCAGCGACCTGCACTTCGAGCGCGAAGGCAAGGTG TCGCCGGCCGGCTTGCCGCTGTCGGAAGTGCAGGTCACCTTCATGGGCCTGGTCGGGCCGTCGGGCGTGCTGCCACGCCCGTACACCGAGCTGCTGCTCG AGCGCCACGTGCAGTATCGCGACGATGCCGCCCATGCGTTTCTCGACATCTTCTCGCACCGCATGACCACGTTGTTCTACGAGGCCTGGCAAAAATACAA ATTCCACATCGAGCACGAGCGCAATGGCACCTCGGGCTTCGATGGCTACCTGCTCAACCTGGTTGGCCTCGGGCCGCGCGCCCAGAAGCTGAAGTTCGAA
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| Amino Acid Sequence |
>TssF1
MLDELLPYYEKELSHLRFLGQEFAAQYPKIASRLLIEGDNCEDPHTERLIEAFSFLSARVHKKLDDEFPEIVESFLEVLYPHYLRPTPSMSIVELSLGRH EKVTEAYRVARHTEMHANPVEGVVCKFRTCYPVELWPIAVQQASFTEMERSAFNGHSADLVARLRIRLAATGDALFGQMDMNRLRFFLDGEATLMLQLYE LLFNNLAKATLSFDDQGRSREVALPADALKTVGYARDEGLVDYSERSFLGYRLLHEYFTFPDKFMFFDLSGFARILQGKAIEQVEVNFYFSDYDLSERLA RLTQNIGRNNFKLNCTPIINLFRQQAEPIKLTHTQHEYQVTPDTRLHNAAEVVSIDRVRRVRKLGGIDQVATCQPFFEPRGEQDPHSSFWVARRRNQGDA TAMSIRVVDRDLELIDASSDTLSIGLTCSNRDVPLMLPFGGERGDFTIPANSVIKDIRCLRKPTATVRVPLGKGLIWRLIAHLSLNHLSLVSQGREVLLE LLSLYNYRNVSAIRKQINGIKAISSEPVVARIGHPRPNFVRGVGITLTLDESQFIGSGVFLFGRVLDHFFGQYCSMNSFTQLTLRTQQREKRVVQWPART GDQPLV
BLASTP |
DIAMOND BLASTP (DIAMOND is faster than BLASTP)
Search for conserved domains in this protein at NCBI CDD site
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