Pseudomonas resinovorans CA10 (NBRC 106553), PCA10_RS26055
Cytoplasmic
Cytoplasmic Membrane
Periplasmic
Outer Membrane
Extracellular
Unknown
Sequence Data
| Strain | Pseudomonas resinovorans NBRC 106553 DNA, complete geonome. [Details] | |
| DNA Sequence Upstream of Gene |
CATGTCCAGGAAGTCGATCAGGCCGAAGCCGCCCTCCGGCAGGCGCAGGATGTTGCCCAGGTGCAGCGAGCGGAAGTAGATGCCGCGCTGGTGCAGGGTG TGGATGAAATCGGCCAGCTCGGGCAGAAATTCATCGAACTCCTGGCGCTTGTTGCGATACAGCTGATCCAGCGAACGGCCTGGCAGCGGGGCATAGAAAC AGGCGCTGACCGCCTCGGAGCGCTCGAGCCACATGCATTCGCTGATTCGGGGGGTAGCAATGCCGCGCTCGGTGAGCCGCTCGGCATTGCGTGCGAAGCG CTGCGCGGCGGGGCGCAGGCGGGCGAGCCAGAGCCGTCGGCGTGGGCGGAAGATCTTCAGCAGCTGGCCGTCCGGCTGGCGCAGGACCTTGGGGCCGCGC CCGTCCTTTTCCAGTACCTCGCCCTGGGCGAGCCACAGCTGTAATTCTTTCGCTGGTACAATCCGCATCAATTTTCTCTGCGTAGCTAAAGGGATCGAGA
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| DNA Sequence for Gene |
>PCA10_RS26055
GTGGCCAATTCTAACCAGCAATCAGATCTCCGGGTTTATCTACGGTTGCTGCGCTACGTCAGGCCGTACGTGGGGCTCTTTCTGCTCAGCCTCCTCGGGT TCCTGATCTTTGCTTCGACCCAGCCGATGCTGGGCTACATGCTCAAGTACTTCGTCGACGGCCTGGCCAACCCCCACGTCGTATTGTTTCCGAAGATTCC CTACCTGCGGGACATGGATCTGGTACAGGCCGTACCGATACTCATAGTCCTGATTGCGCTCTGGCAGGGTATCGGTTCGTTCCTCGGCAACTTCTACCTG GCCAGGGTCTCGCTCGGCCTTGTGCACGACCTGCGGGTGGCGTTGTTCAACCAGTTGATGTGCTTGCCCAATCGATATTTCGACAGCAACAACTCGGGGC ACCTGATCTCCCGTATCACCTTCAACGTGACCATGGTCACCGGTGCTGCCACCGATGCGATAAAAGTGGTGATTCGCGAGGGCATGACGGTGATCTTCCT GTTTGCCTCGCTGCTCTGGATGAACTGGAAGCTGACGCTGGTCATGGTCGCCATCCTGCCGTTGATCGCGTTGATGGTCAGCAGTGCCAGCAAGAAATTC CGCAAACAGAGCAAGAAGATCCAGGTAGCGATGGGGGATGTCATGCACATCTCGTCGGAGGCCATTCAGGGTTACCGGGTGGTGCGCAGCTTCGGTGGCG AACCCTACGAACAGCAGCGTTTTCTGGATGCCAGTATCGGCAACACGGAAAAGCAACTGCGGATGATCAAGACCGGCGCCGTTTATACCCCGATGCTGCA ACTGGTGATCTACAGCGGTATGGCGCTGCTGATGTTCCTGGTGTTGTTCCTGCGTGGCGATGCCTCGGCGGGCGACCTGGTGGCCTACATCACGCTGGCG GGACTATTGCCGAAACCGATTCGCCAGTTGAGCGAAGTCAGCTCGACCATCCAAAAGGGACTGGCGGGCGCCGAAAGCATCTTCGAGCAGCTGGACGAGA CGCCGGAGGAGGATCGCGGCACGGTCGAGCGGGAGCGGGTCGGTGGCCGCCTGGAAGTGCGCAACCTGAGTTTCCGCTACCCCGGCACCGACAAGCCCGT GCTGCAGGACATCAGCTTTGCGGCCGAGCCTGGCCAGATGATTGCCCTGGTTGGGCGCTCCGGCAGCGGCAAGTCCACCTTGGCCAACCTGATTCCGCGT TTCTACCACCATGAACAAGGGCAGATCCTGCTGGATGGTGTGGATATCGAGGACTATCGCCTGCGCAACCTGCGCAGCCATATCGCCTTGGTCACCCAGC AGGTGACCCTGTTCAACGACTCGGTGGCCAACAACATCGCCTATGGCGACCTGGCAGGCACGCCGCGGGAGGAGGTCGAGAAGGCCGCCGAGGCCGCCTA CGCCAAGGAATTCGTCGACAAGCTGCCCCATGGCTTCGACACCGAAGTGGGTGAGAACGGCGTGCTGCTTTCCGGCGGACAGCGCCAGCGTCTGGCCATC GCCCGGGCCTTGCTGAAGAACGCGCCGGTGCTGGTGCTGGACGAGGCCACTTCGGCCCTGGACACCGAGTCCGAGCGGCATATCCAGGCCGCGCTGGATC GCGTCATGGATGGCCGCACCACGCTGGTGATCGCCCACCGCCTGTCCACCATCGAGAAGGCGGACCTGATCCTGGTGATGGACCAGGGGCGCATCGTCGA GCGCGGCAGCCACGCCGAGCTGCTGGCGCTGAACGGCTACTATGCCCGTCTGCACGCCAACCAGTTCGCCGAGGAGTCCCAGTCGGACGCGGGTTGA
BLASTN Search
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DIAMOND BLASTX Search (DIAMOND is faster than BLASTX)
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| DNA Sequence Downstream of Gene |
TCATAGCTTCCGGCCAATCGGCAGGGTGCGTGCCGCCAGGCTCGTGATCCCTGCCCTCGGCCCGCCCGGCTGCTATGGTATTATCCGCGCCGTTTTTGAC GTCCGGAGACTCCATGAAGCTGTCCATGCCCCGATTCGATCAGGCCCCCGTTCTGGTGGTGGGCGACGTCATGCTTGACCGTTACTGGCATGGCGGCACC TCGCGCATTTCGCCCGAGGCGCCGGTGCCCGTGGTCAAGGTCGAGCAAGTTGAGGACCGTCCCGGCGGTGCCGCCAACGTCGCCTTGAACATCGCCGCCC TGGGCGCTCCTGCCATGCTGGTGGGCATCACCGGCGTCGACGAAGCGGCCGAGAGCCTGGCCGACAGCCTCAATGCCGCAGGTGTTGACGTGCATTTCCA GCGCCACGCCGAGCAGCCGACCATCGTCAAACTGCGGGTCATGAGCCGTCACCAGCAATTGCTGCGCATGGATTTCGAGGAAGCCTTCGCCACCGACGCC
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| Amino Acid Sequence |
>lipid A ABC transporter permease/ATP-binding protein MsbA
MANSNQQSDLRVYLRLLRYVRPYVGLFLLSLLGFLIFASTQPMLGYMLKYFVDGLANPHVVLFPKIPYLRDMDLVQAVPILIVLIALWQGIGSFLGNFYL ARVSLGLVHDLRVALFNQLMCLPNRYFDSNNSGHLISRITFNVTMVTGAATDAIKVVIREGMTVIFLFASLLWMNWKLTLVMVAILPLIALMVSSASKKF RKQSKKIQVAMGDVMHISSEAIQGYRVVRSFGGEPYEQQRFLDASIGNTEKQLRMIKTGAVYTPMLQLVIYSGMALLMFLVLFLRGDASAGDLVAYITLA GLLPKPIRQLSEVSSTIQKGLAGAESIFEQLDETPEEDRGTVERERVGGRLEVRNLSFRYPGTDKPVLQDISFAAEPGQMIALVGRSGSGKSTLANLIPR FYHHEQGQILLDGVDIEDYRLRNLRSHIALVTQQVTLFNDSVANNIAYGDLAGTPREEVEKAAEAAYAKEFVDKLPHGFDTEVGENGVLLSGGQRQRLAI ARALLKNAPVLVLDEATSALDTESERHIQAALDRVMDGRTTLVIAHRLSTIEKADLILVMDQGRIVERGSHAELLALNGYYARLHANQFAEESQSDAG
BLASTP |
DIAMOND BLASTP (DIAMOND is faster than BLASTP)
Search for conserved domains in this protein at NCBI CDD site
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