Pseudomonas resinovorans CA10 (NBRC 106553), PCA10_RS23095
Cytoplasmic
Cytoplasmic Membrane
Periplasmic
Outer Membrane
Extracellular
Unknown
Gene Ontology
| Ontology | Accession | Term | GO Evidence | Evidence Ontology (ECO) Code | Reference | Comments |
|---|
Functional Classifications Manually Assigned by PseudoCAP
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Pathways
| Database | Xref | Pathway | Version | Evidence | PMID |
|---|---|---|---|---|---|
| KEGG | pre02025 | Biofilm formation - Pseudomonas aeruginosa | 81.0+/01-23, Jan 17 |
ECO:0000249
sequence similarity evidence used in automatic assertion |
Functional Predictions from Interpro
| Analysis | Accession | Description | Interpro Accession | Interpro Description | Amino Acid Start | Amino Acid Stop | E-value |
|---|---|---|---|---|---|---|---|
| FunFam | G3DSA:3.30.70.270:FF:000001 | Diguanylate cyclase domain protein | - | - | 206 | 369 | 1.8E-48 |
| SMART | SM00267 | duf1_3 | IPR000160 | GGDEF domain | 200 | 369 | 5.5E-56 |
| CDD | cd01949 | GGDEF | IPR000160 | GGDEF domain | 213 | 366 | 4.32501E-62 |
| SUPERFAMILY | SSF55073 | Nucleotide cyclase | IPR029787 | Nucleotide cyclase | 216 | 366 | 7.3E-46 |
| PANTHER | PTHR45138 | REGULATORY COMPONENTS OF SENSORY TRANSDUCTION SYSTEM | - | - | 174 | 369 | 2.9E-64 |
| Coils | Coil | Coil | - | - | 193 | 213 | - |
| NCBIfam | TIGR00254 | JCVI: diguanylate cyclase (GGDEF) domain | IPR000160 | GGDEF domain | 207 | 367 | 5.8E-40 |
| Pfam | PF00990 | Diguanylate cyclase, GGDEF domain | IPR000160 | GGDEF domain | 212 | 365 | 5.9E-43 |
| Gene3D | G3DSA:3.30.70.270 | - | IPR043128 | Reverse transcriptase/Diguanylate cyclase domain | 211 | 374 | 5.2E-55 |
Search for additional functional domains at the NCBI CDD database website. Go to this protein's amino acid sequence and follow the link.