Pseudomonas resinovorans CA10 (NBRC 106553), PCA10_RS04765
Cytoplasmic
Cytoplasmic Membrane
Periplasmic
Outer Membrane
Extracellular
Unknown
Sequence Data
| Strain | Pseudomonas resinovorans NBRC 106553 DNA, complete geonome. [Details] | |
| DNA Sequence Upstream of Gene |
CAAGCACATAAGAAATCCCAGAAGTTCCGCGACTGGGTCGACCATACCGTCCTGAAACTCCCCATCGTCGGCGACATCCTCTACAAGTCCGCCGTAGCCC GCTTCGCCCGAACCCTGGCAACCACTTTCGCTGCCGGCGTGCCCCTGGTGGACGCCCTGGACTCCGTGGCAGGCGCCAGCGGCAACGTGGTGTTCAAGAA TGCGGTGCTCAAGGTCAAGCAGGATGTGTCCACCGGCATGCAGCTGAACTTCTCCATGCGCACCACCGGCGTCTTCCCCGCCATGGCCGTGCAGATGACC GCCATCGGCGAAGAATCCGGCGCCCTGGACGAGATGCTCGACAAGGTCGCCAGCTTCTACGAAGCCGAAGTGGACAACGCCGTCGACGGCCTGACCGCCC TGATGGAGCCCATGATCATGGCCGTACTCGGCGTCCTGGTCGGCGGCCTGATCATCGCCATGTACCTGCCCATCTTCCAACTCGGCAACGTCGTCTAAGC
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| DNA Sequence for Gene |
>PCA10_RS04765
ATGCAGTTGATCGACTTCCTGGCCAGCCATGCGCTGGCCTTTGTTTTCTGCACCCTCGCCCTTGGTTTGTTGGTGGGCAGTTTCCTCAATGTGGTGATCC ATCGCCTGCCGCAGATGATGCTGCGCGATTGGCAGGAGCAGGCCCGCGAGGTGCTGAGCCTGCCGGCCGAGCCCAAGGGCCCGGTGTTCAACCTGGTACT GCCGAATTCGCGCTGCCCCCACTGCAACCATGAGATCCGCGCCTGGGAGAACATTCCCGTGGTCAGTTACCTGGCCCTGCGTGGCAAGTGCTCGTCGTGC AAGGCCGCCATCAGCACGCGCTATCCCTTGGTGGAGCTAGTCTGCGGCCTGCTGTCGGCCTACGTCGCCTGGCATTTCGGCTTCAGTTGGCAGGCCGGAG CCTTCCTGGTGCTGACCTGGGGCCTGCTGGCGATGAGCATGATCGACGTCGATCACCAGCTGCTGCCGGATGCACTGGTCCTACCGCTGCTCTGGCTCGG GCTCATCCTCAACAGCCAGGGCCTGTTCGCCAGCCTGGAGGATGCGCTCTGGGGCGCGGTGGCCGGCTACATGAGCCTGTGGTCGGTGTACTGGCTGTTC AAGCTGGTGACCGGCAAGGAAGGCATGGGCCACGGCGACTTCAAGCTGCTGGCAATGCTCGGCGCCTGGGGCGGCTGGCAGGTACTGCCGCTGACCATCC TGCTCTCGTCCCTGGTGGGCGCGGTGCTGGGGGTGATCATGCTGCGCCTGCGCAACCAGGACAGCACCACGCCCATCCCCTTCGGCCCCTACCTGGCCAT TGCCGGCTGGATTGCATTGCTCTGGGGTGATCAAATAACGGCGACCTATCTGCAGTTCGCCGGTTTCAAATGA
BLASTN Search
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DIAMOND BLASTX Search (DIAMOND is faster than BLASTX)
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| DNA Sequence Downstream of Gene |
ACACACCCTGGATTCTTGGCCTCACAGGCGGCATCGGTAGCGGCAAGAGTGCCGTCGCCGCCCATTTCAGCGAGCTTGGCGTACATCTGGTGGATGCCGA CCACGCCGCGCGCTGGGTGGTGGAACCCGGCCGCCCGGCCCTGGCGAAGATCGCCGAGCATTTCGGCAGCGGGGTACTGCAGGCCGACGGCCAGCTGGAC CGCGCAGCCCTGCGCCAGCGCATTTTCGCCGACGCCGAAGAGCGTCGCTGGCTGGAAAGCCTGCTGCACCCGCTTATCGGCCAGGAAATCAGCCAGTACC TGGCCCGCGCCGAATCCCCCTATGCCATCCTGGTGTCGCCGCTGCTGATCGAATCCGGCCAGTACCGCATGACCCAGCGCGTGCTGCTGGTGGATGCCCC CGAAGCCGCGCAGCTCCAGCGCACCATGCAGCGGGACAATGTGCCCGAAGCGCAGGTCCAAGCCATATTGAAGGTGCAGGCCAGCCGCGAGGAGCGCCTC
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| Amino Acid Sequence |
>type 4 prepilin peptidase PilD
MQLIDFLASHALAFVFCTLALGLLVGSFLNVVIHRLPQMMLRDWQEQAREVLSLPAEPKGPVFNLVLPNSRCPHCNHEIRAWENIPVVSYLALRGKCSSC KAAISTRYPLVELVCGLLSAYVAWHFGFSWQAGAFLVLTWGLLAMSMIDVDHQLLPDALVLPLLWLGLILNSQGLFASLEDALWGAVAGYMSLWSVYWLF KLVTGKEGMGHGDFKLLAMLGAWGGWQVLPLTILLSSLVGAVLGVIMLRLRNQDSTTPIPFGPYLAIAGWIALLWGDQITATYLQFAGFK
BLASTP |
DIAMOND BLASTP (DIAMOND is faster than BLASTP)
Search for conserved domains in this protein at NCBI CDD site
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