Pseudomonas trivialis IHBB745, AA957_RS27345

Cytoplasmic
Cytoplasmic Membrane
Periplasmic
Outer Membrane
Extracellular
Unknown

Sequence Data

Strain Pseudomonas trivialis strain IHBB745, complete genome. [Details]
DNA Sequence Upstream of Gene
ACCTGCACCAATCAAAACCTGCCTCGACTGTTGCAGGTAGGCGATATCAACCAGCCTTGCGAACAGACGCCTGAGGGGGTGTCGTTCCGCAATATCTGCG CACCGACAGCAAGTTTCTCTCCACCCCTGGACCAGGATTTTCTGTGGCGGCTTATCAGCAACATGTCGCTCAACTACCTGTCATTGAGCGACATCAATGC CTTGAAGGTGATCCTCCAAACCTATGACTTTCCTCGCTACCACGACCGGCAGGCACAGAAGGTCAGCGAGAGAAGGTTGGGTGCGATGCGATCCGTCAGC CATACGGCGGTCGACCGATTGCAGCGTGGCTTGCCGTTTCGCGGGGTACGAATCGATCTGACCATCGACCCTCAAGGCTTTTTGGGGCAGGGCGAGGTGT TCGTATTCGGCTCGGTGCTCAACGAATTCTTCGCGCTTTACGCCAGCCTCAACACCTATCACGAATTAAGAGTCATCAGCACACAAGGAGACGTGTACCT
DNA Sequence for Gene
>AA957_RS27345
ATGGTCACCAAGGATGGGGCAGCAGCCCCTGCTTTGACGCAACTGTCCCGGGTCATTCGCGAGTATTCGCTGTTCCAGGCGGTTTTGCAGGTGATCGAGC GTCTGCGCGACGCTCATCCGTTGCTGGAGGACGACGCGCTGTATGACCTGTTGGACTTTCAGGCCAACCCAGGCCTTGGTTTTCCTGGTCACGATATTGA TCGGGTGGAGTTTTTTATCGAGCGCGATCAACTGCGTGCGCGTCTTCGCCTCAACGTGTTGGGCTTGTGCGGTGCGGGGTCGCCATTGCCTGCGTTTTAC GGCGAGCAGGCCTGTGCCGACGGAGTGGGGGGTAACACTACGCGAGACTTCCTGGACGTGTTTCACCACCGCCTGCAACGACTGATGCTGCCGATCTGGC GCAAATACCGGTACCGGGCGTGTTTCCAGGCGGGCGCGCGCGATGCTTTTTCCGAGCAGATGTTTGCGTTGATCGGGTTGAGAGGGCAGCAGATTCGCAA CGCGGCGCAATTGGACTGCAAGCGGCTGTTGCCCTACCTGGGGTTGCTTAGCCTGCGGGCGCATTCGGCCGCCATGATCGAGACGGTGCTGCGCTACTAC TTCAAGCACAGCCGCTTGTTCATCGAACAATGGGTCTTGCGCACCGTAGTGACCGCCGACTCGCAGAAAAATCGGCTCGGTGTTGCGAACAGCGTGCTCG GCCATGACCAGGTGCTGGGAAGCCGTGTCGCCGACTGTAGTGGCAAGTTCAGGGTGCATCTGCAGAGCCTGGGCTGGCACCAGTTCCATGGGTTTCTACC CACTGGCAAGGACTACCCGCTGCTGTGTTCGCTGGTGCGGCTGACGACGCGGGATCCTTTGGCGTATGACCTGCGCCTGGTACTGGCCAAGGAAGAGATC AGGCCGTTGCACATTGGCGAACACAACGTCTGTCGCCTCGGTTGGACCAGTTGGCTGGCACATGAGTGCGCCGACGGTGTGGTTCTGGTGCCGAGCAACG CTCATTAG
BLASTN Search  |  DIAMOND BLASTX Search (DIAMOND is faster than BLASTX)
DNA Sequence Downstream of Gene
GGATGAATCATTATGATGAATGTGGATCTGCAACAACTTATCCAGACGTTGACTACCCGGACCCGCCGGGATTTGGAGCGCGCTGCTGAACGCTGCGTAA TGCGCGGCGGCAGGGAAGTGTTGGTGGAAGACCTGCTGTTGACTCTGCTGGAGCATCACGACGGCCTTCTTGTGCGGGCATTGGCGGATGCGGACATCGA AGTTGGCGAGCTGCAAGCCACACTGCAGCCCAAGGGTGAGGCGAGTGCTTCGCGCAATCCAGTGTTTGCCCAGGCGCTTGTGCAATGGCTGCAACAGGCC CTGATGATTGCCCATCTGGAGCTGCGACAGACTGAGGTCGATCACGGCGCCCTGTTGCTGGCACTGTTGCGTCACCCGCTGCACCACGCAGGAAGTGGCT ATCAGCGCTTATTAAGCCGGTTGGATGCGCAGCGTGTGCAGGGCTTCGTGTCGAGTCAGGCGCCTGACATTCATCCTGCGCCGCAGGGTGAATCATTGCT
Amino Acid Sequence
>type VI secretion protein
MVTKDGAAAPALTQLSRVIREYSLFQAVLQVIERLRDAHPLLEDDALYDLLDFQANPGLGFPGHDIDRVEFFIERDQLRARLRLNVLGLCGAGSPLPAFY GEQACADGVGGNTTRDFLDVFHHRLQRLMLPIWRKYRYRACFQAGARDAFSEQMFALIGLRGQQIRNAAQLDCKRLLPYLGLLSLRAHSAAMIETVLRYY FKHSRLFIEQWVLRTVVTADSQKNRLGVANSVLGHDQVLGSRVADCSGKFRVHLQSLGWHQFHGFLPTGKDYPLLCSLVRLTTRDPLAYDLRLVLAKEEI RPLHIGEHNVCRLGWTSWLAHECADGVVLVPSNAH
BLASTP | DIAMOND BLASTP (DIAMOND is faster than BLASTP)
Search for conserved domains in this protein at NCBI CDD site