Pseudomonas trivialis IHBB745, AA957_RS16620
Cytoplasmic
Cytoplasmic Membrane
Periplasmic
Outer Membrane
Extracellular
Unknown
Gene Ontology
| Ontology | Accession | Term | GO Evidence | Evidence Ontology (ECO) Code | Reference | Comments |
|---|---|---|---|---|---|---|
| Molecular Function | GO:0003677 | DNA binding |
Inferred from Sequence Model
Term mapped from: InterPro:PF00440
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ECO:0000259 match to InterPro signature evidence used in automatic assertion |
Functional Classifications Manually Assigned by PseudoCAP
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Functional Predictions from Interpro
| Analysis | Accession | Description | Interpro Accession | Interpro Description | Amino Acid Start | Amino Acid Stop | E-value |
|---|---|---|---|---|---|---|---|
| Pfam | PF00440 | Bacterial regulatory proteins, tetR family | IPR001647 | DNA-binding HTH domain, TetR-type | 14 | 59 | 6.5E-9 |
| Hamap | MF_00768 | HTH-type transcriptional regulator BetI [betI]. | IPR017757 | Transcriptional repressor BetI | 1 | 197 | 108.342865 |
| Pfam | PF13977 | BetI-type transcriptional repressor, C-terminal | IPR039538 | BetI-type transcriptional repressor, C-terminal | 84 | 189 | 1.8E-28 |
| SUPERFAMILY | SSF48498 | Tetracyclin repressor-like, C-terminal domain | IPR036271 | Tetracyclin repressor-like, C-terminal domain superfamily | 81 | 193 | 8.26E-20 |
| Gene3D | G3DSA:1.10.357.10 | Tetracycline Repressor, domain 2 | - | - | 6 | 196 | 2.4E-42 |
| PANTHER | PTHR30055 | HTH-TYPE TRANSCRIPTIONAL REGULATOR RUTR | - | - | 8 | 177 | 1.5E-11 |
| NCBIfam | TIGR03384 | JCVI: transcriptional regulator BetI | IPR017757 | Transcriptional repressor BetI | 2 | 192 | 7.6E-74 |
| SUPERFAMILY | SSF46689 | Homeodomain-like | IPR009057 | Homeobox-like domain superfamily | 5 | 76 | 2.87E-14 |
Search for additional functional domains at the NCBI CDD database website. Go to this protein's amino acid sequence and follow the link.