Pseudomonas trivialis IHBB745, AA957_RS10845
Cytoplasmic
Cytoplasmic Membrane
Periplasmic
Outer Membrane
Extracellular
Unknown
Sequence Data
| Strain | Pseudomonas trivialis strain IHBB745, complete genome. [Details] | |
| DNA Sequence Upstream of Gene |
GCCGGCAGCGACACTATCTCCATTGAGTACAAGGAGTTCGGTATTCGCCTGACCCTGACCCCCACCGTCATTGACCGCAACCGCATCACCCTCAAGGTGG CGCCGGAAGTCAGTGAGCTGGACTACAGCAACGCGGTGCAGATCCAAGGCATCCAGGTGCCGGCCCTGACCGTGCGCCGCACCGACACCAGCGTGTCCTT GGCCGATGGCGAAAGTTTCGTGATCAGCGGCCTGATCAGTACCAATAACCGCTCCACCATCAGCAAGTTTCCCGGGCTGGGCGATATCCCGATCCTCGGG GCATTTTTCCGCGACTCCAACATCAGCCGCGAAGAAAAAGAACTGCTGATGATCGTCACGCCGCACCTGGTACAACCGTTGGCCGCCAACGCCCAACTGC CGTCGTTGCCGGGTGAAAAACTGCGCAGCTACGACCCGAACTGGTACCGGCTGTTCTTCCTGGAAAACGGTAATTTCGACCGTCGCAGTGGACTTTCCCA
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| DNA Sequence for Gene |
>AA957_RS10845
ATGAGCGATAGCCTGAACCAGACCTTCCTCGCCATCACGCGCAACACCACCGACCTGGAGTGGCTGCAGGGTGCCCTCGCGCCCCTTGGCCAAGTCGTCA GCGCCGGCACCGGCAGCCTGGACGAACTGCTGGCGCTGGTGGACGTGACCTTCGCCAGCCTGGTGTTCGTCGGCCTCGACCGGGAAAACGTCGTGGCCCA GAGCGCGCTGATCGAAGGTGCCCTGGAAGCCAAGCCGATGCTCGCCGTGGTCGCCCTCGGCGATGGCATGGACAACCAGCTGGTACTCAACGCCATGCGC GCCGGTGCCCGCGACTTCGTGGCCTACGGCTCGCGTTCCAGCGAAGTGGCGGGGCTGGTACGACGCCTGAGCAAGCGCCTGCCCACCGTCGCCCACAATG CACAGCTGGGGGGCCTGACCGTACTGTTTGGCACGCAGAGCAACGCTGACGGCGCAATGCTGGCAACTCACCTGGCCATGGTCGTGCAGAAAAGCGGGCA ACAAACCTTACTGCTCGACCTCGGCCTGCCACGCAGCGACAGCCTGGCCCTGCTGGGCTTGGAAAGCACATTCAATTTCGGTGATGCGTTGCGGCACTTG CGCCGCCTCGATACCACGTTGATCAACAGTGCCTTTACCACCGCTCTGGATGGCCTGCGCATCCTGGCGTACGCCACCGGTGACGAGCCACTCAAACTGA CCAGTGCCGCCGAGCTGTACATGTTGCTCAGCGCACTGCGCCAACACTTCCAGCACATCGTCGTGAACATCACCGGGCAGCCAGACAGTGAAGCGCTGCG CACCTTTGTCAGCCATTGCGACAAGCTGCTGTGGTGCACCGACCAGAACGTACTGGACTGTCGCCGCAACCTCGCGGTGCTCAGCCGCTGGCGCGAAAAA GGCATGAAGCTCGATCACGCCAAGCTGGTGATTGACCGCTACATCAAGGCCTGTGCGCCGGACACCGAAGCGCTGGAAAAAAGCTTCGGCCTTGAGTGTG TCGCCGTACTGCCCCTGAGCGCCGAGCTGCGCCTGAACGTGAAAAACCAGGGCCAGACCTTGTTCGCCCTGGCCCCGCGTGAACCGCTGACCCAAGCCGT ACGCACCTTGGGTGAGCGCCTGGCAAAACGCTCCGAGGGCCTTGCGAAGCCCTCCATGCGCTGGTTTGAACGCATCCTGGGGTCGGGACGATGA
BLASTN Search
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DIAMOND BLASTX Search (DIAMOND is faster than BLASTX)
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| DNA Sequence Downstream of Gene |
GCGGCGAAAAACTGTTTGGCGGCCCGGCCCGCAGCGTCAGCGGCAACAGCGATCACGATGGGCTGAAACTGGTGCTGCACCGCTACATCATCGACGCCAT CGAGGAGTCGGGCAAAAACCTGCTCGAAGGCACGCGCCAGTCGCTGGCGCAATTTGTCATCGACAAGGTCTCGGAATACATCACGCGCATGCGCCTGGCG ATCTCGCGTTATGAGATGGAACGCCTGGCCGAAGAGATCGTCGATGAGCTCACCGGTTTCGGCCCGCTGGAAGTGCTGCTGCGCGACCCTTCGGTCACCG AAATCCTGGTCAACGGGCCGCACCGGGTGTTTATCGAGCGCGATGGCCTGCTGCACCAGAGTGACTTGCGCTTCATCGACGACCACCACGTGGAACGCGT GATGCAACGTATCCTCGCGCCGCTGGGCCGGCGCCTGGATGAGTCCTCGCCGATGGTGGATGCGCGCTTGCCCGACGGCAGCCGGGTGAATGCGATCATC
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| Amino Acid Sequence |
>pilus assembly protein
MSDSLNQTFLAITRNTTDLEWLQGALAPLGQVVSAGTGSLDELLALVDVTFASLVFVGLDRENVVAQSALIEGALEAKPMLAVVALGDGMDNQLVLNAMR AGARDFVAYGSRSSEVAGLVRRLSKRLPTVAHNAQLGGLTVLFGTQSNADGAMLATHLAMVVQKSGQQTLLLDLGLPRSDSLALLGLESTFNFGDALRHL RRLDTTLINSAFTTALDGLRILAYATGDEPLKLTSAAELYMLLSALRQHFQHIVVNITGQPDSEALRTFVSHCDKLLWCTDQNVLDCRRNLAVLSRWREK GMKLDHAKLVIDRYIKACAPDTEALEKSFGLECVAVLPLSAELRLNVKNQGQTLFALAPREPLTQAVRTLGERLAKRSEGLAKPSMRWFERILGSGR
BLASTP |
DIAMOND BLASTP (DIAMOND is faster than BLASTP)
Search for conserved domains in this protein at NCBI CDD site
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