Pseudomonas trivialis IHBB745, AA957_RS09210
Cytoplasmic
Cytoplasmic Membrane
Periplasmic
Outer Membrane
Extracellular
Unknown
Sequence Data
| Strain | Pseudomonas trivialis strain IHBB745, complete genome. [Details] | |
| DNA Sequence Upstream of Gene |
GCAAACCACGGGCTGGGTCTGGCCATCGTCAAGGCGATTGCGCTGATGCACGGCGGTGATGTGTTTGTGCGCAGTGAGCACGGCGGCAATACCTTCGGCA TCACCCTTCCCGTCTAGACACCTCGGTTTAACCTGTGGGAGCTGGCTTGCCTGCGATAGCGGTGGTTCAGCAGCCGACAAGGCGGCTGACACGACGCCAT CGCAGGCAAGCCAGCTCCCACATTGGTAAATCATCCCCAGCACTGTTGCGATTTGGGCAACAGTCATTATCTTGTTACACTCTGTATCGTACCGCTCGCC TGCGTTAATTTGACGCATCGATGAGCGCGACGGCAAAGGCAGCTTCCGCTTACCCGAATTTCCCTCGACTTATTTCCAGGGCTCTACACTGGGAATCTGT CTTAAAGCCGCTGACTTCAGCGGCTTTTTTTTGCCGTAAAAAAGGCCAGGCACACCCCCACGACACTGGCCGTTCCAGATTGACCAAAGGAGCTCCACCG
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| DNA Sequence for Gene |
>AA957_RS09210
GTGAAGAACTCGCTGACGTTCACCCCGTTATTCCTCGCGATTGCAGCAACGATTGCCCCCCTTGCCCATGCGGCAGACGCCTCCCCTGCCGACGGCTTTG TCGAAGGTTCCAGCCTCAAGCTAAACGCCCGCAACTACTACATGAACCGCGACCGTCGCGACATCCACACCGATGACAGCAAAGAATGGGGCCAGGGTTT CATTGGCACTTTTGAATCCGGCTACACCCAGGGCACCGTCGGCTTCGGCCTGGACGCTCACGCCATGCTCGGCCTCAAGCTCGACGGCGGCGGCGGCACC GATGGCTCCAGCATCCTTCCGTACGGCAGTGGCAACGGCAAGGCGCCCGGCTCGTTTTCCACGGCGGGTGGCACCTTGAAAATGCGTGCGTTCGATACCG AGCTGAAAGCCGGCGACCTGTTTCTGAATAACCCGGTGATCGCCGGCGGCATGACCCGCATGCTGCCTCAGACCTTCCGTGGCGTGAGCCTGGTCAACCA CAGCCTGGACGGCTGGATGTTCGAAGGTGGCCAGGCCAGCTTCACCAAGCTTTACAACCAGAGCGGCCACCGGCGCATCGGCACCAGCTACGGCGCCCTG CCGACCAACGCGGACAGCCAGCACATGAACTGGGCGGGCATGTCGTTCAGCGGCATCGATGGGCTGACCAGCAACCTCTACGCCTCCGAACTCAAGGACG TGTGGAACCAGTACTACTACGACCTGGACTACACCTATGTGGTGAACGAGATGATCAGTCTCAACCCCGGTCTGCACTACTATCACACCCAGGACACCGG GCAGTCGCTGCTGGGCGATATCGATAACAATACCTACAGCCTGCATTTCACCGTGAACGCGGGTCATCACAGCGTCACCGCCGCCTACCAGCGAGTCAAT GGCAACACGCCGTTCGACTACATTGCCCAGGGCGACAGCGTGTACCTGGACAACTCCCAGCAATACTCCGACTTCAACGGCCCCAACGAACGCTCGTGGA AGCTCAAGTACGCCTATGACTTCGGCGGCCTGGGCCTACCCGGCCTGAGCACGGCCGTGTCCTATATCAGCGGCAAGACCGACTTGACCAAGGTCGATCC GCAAAGCCGTGGCTACAGCGCCTGGTACAGCGCTGACGGTAAGGACGCCAAGCACTGGGAACGGGATATCGACGTGAAATACGTGGTGCAGGGCGGCAAG GCCAAGGACTTGGCATTGCGCCTGCAATGGGCGGTCAACCGGGGCAGCAATGGTTACTCGGCGGTGGATCGGGATGTGGATGAATATCGGATGATCGTCG ACTATCCGATCAACGTGTTCTGA
BLASTN Search
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DIAMOND BLASTX Search (DIAMOND is faster than BLASTX)
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| DNA Sequence Downstream of Gene |
CACCCTCATTTCTTTCGCGGCGATGATTTAATTTTCATCGGGTAGAACTAAACTGCCAGTACCTTCCCTGCTGAAGTCTGCGCGATGAGCCAACGCCGTA CTCCTACCCTGCCTGCGCGCCCGGAGCTGTTACTGATTCTGGGCAGCGGCTTCACCGTGACCTTGATTGTGGTCATCGTCGCCGCGCTGTTGATTCGTGA ACACGCCAGCACCTTGCAGGCCGCTCAACGCTCGACGAGCAACATCACGCAATTGATCAACGCCGACGTGTTGCGAAACGTCGAACTCTATGACTTTGCC TTGCAGGGGTTGATCGCTGCCAGGCAGCGCCAGGATTTGTACCAGGCATCGGCAGAGATCCAGCACCTGGTGCAGTTTGATCAATCCATCGCCGCGCCTT TCAAAGGTGAAGTCCTGCTGCTGGACGCCAATGGTTCAGTGATCGCGGACTCATCGACACTCACGCCGACACCGCGTAATTTCGCCGACCGTGACTATTT
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| Amino Acid Sequence |
>porin
MKNSLTFTPLFLAIAATIAPLAHAADASPADGFVEGSSLKLNARNYYMNRDRRDIHTDDSKEWGQGFIGTFESGYTQGTVGFGLDAHAMLGLKLDGGGGT DGSSILPYGSGNGKAPGSFSTAGGTLKMRAFDTELKAGDLFLNNPVIAGGMTRMLPQTFRGVSLVNHSLDGWMFEGGQASFTKLYNQSGHRRIGTSYGAL PTNADSQHMNWAGMSFSGIDGLTSNLYASELKDVWNQYYYDLDYTYVVNEMISLNPGLHYYHTQDTGQSLLGDIDNNTYSLHFTVNAGHHSVTAAYQRVN GNTPFDYIAQGDSVYLDNSQQYSDFNGPNERSWKLKYAYDFGGLGLPGLSTAVSYISGKTDLTKVDPQSRGYSAWYSADGKDAKHWERDIDVKYVVQGGK AKDLALRLQWAVNRGSNGYSAVDRDVDEYRMIVDYPINVF
BLASTP |
DIAMOND BLASTP (DIAMOND is faster than BLASTP)
Search for conserved domains in this protein at NCBI CDD site
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