Pseudomonas trivialis IHBB745, AA957_RS01010 (ligD)
Cytoplasmic
Cytoplasmic Membrane
Periplasmic
Outer Membrane
Extracellular
Unknown
Sequence Data
| Strain | Pseudomonas trivialis strain IHBB745, complete genome. [Details] | |
| DNA Sequence Upstream of Gene |
TCGCCCCAGATAAACGCGGCGGCAAAGTGTATGCGTTGCTAAGGGAAACCCTTAAAAAAACCAATAAAGTCGCCCTGGCCAATGTGGTGCTGCACACCAA GCAGCACTTGGCGGCATTGATGCCCCTGGACTCGGCCCTGATACTGGTGATGTTGCGCTGGCCCGCCGAGGTGCGCAGCCTGGACGATCTGGAACTGGGC AGCGACGTGACCAAACCCACACTGGCCAAAGGTGAGCTGGACATGGCCAAGCGCTTGGTGGAAGACATGAGCGCCGACTGGCAACCGGAGGACTACCGCG ACAGCTTCCAGGAGAAAATCATGGCGCTGGTGGCCAAGAAGGCCAAGGCCGGCAAGATCGAGGACGTGGAAAGCAGCACGGACGGTGAGGAGCGTAAGTC GGCCGATGTGATTGACCTGACGGAATTGCTCAAGCGCAGCCTGGCCGGCAAACCGGCGAAGAAGCCCGCTGTGAAGAAATCCTCCAAGGCCTCATAAGTC
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| DNA Sequence for Gene |
>AA957_RS01010
|ligD
ATGCCAAAGCCCCTCAGCGACTACAACCGCAAACGCGACTTCGGGATTACCGCCGAACCGGCAGGCAGTGCGCCCGCCGGCAAGCGCGAAGCCTCGGCGC TGTCCTTCGTGATCCAGAAACATGACGCGCGCAACCTGCACTATGACTTCCGCCTTGAGCTTGATGGCGTGTTGCTCAGTTGGGCGGTGCCCAAAGGCCC GAGCCTGGACCCCAGCCAGAAACGCCTGGCCGTCCACGTTGAAGATCACCCCCTCGGCTATGGCAGCTTCGAAGGCAATATTCCGGCAGGTCAGTACGGC GCAGGCGACGTGATCGTGTGGGACCGCGGGGTGTGGCAACCCCATGACGACCCGCGCAAGGCCTACGCCGCCGGCAAGCTCAAATTCACCTTGGTTGGCG AGAAACTCTCAGGCGACTGGACCCTGGTGCGCACGCGCCTGAAGGGCAGCGGTGATAAACAACAATGGCTGCTGATCAAGGAAAAGGACCCACAGGCACG CCCTGCCGATGACTACGATATTGTCCAGGCCCAGCCGAACAGCGTGCTCAGCAACGCCTCGGTCGGCAAACCCAAAGCAAAAGCCAAGCCCAAGCCCAAG CCGAAAAAAGCTGTAGCCACCCTCCCCGAGCAATTTTCCCCGCAATTGGCCACGCTGGTGGACCGCGCGCCAGAAGGCGACTGGCATTACGAAATCAAGT TCGACGGTTACCGCATGCTCGCGCGCATTCGTGACGGCGAGGTACGCCTGTTCACGCGCAACGGCCATGACTGGACCGAACGCCTGCCCCGTCAGGCCAA GGCACTGCAGGCGCTGAAACTCAAGGACAGCTGGCTCGACGGCGAGGTGGTCAGCCTCAACGGCGACGGCCTGCCGGACTTCCAGGCGCTGCAAAACGCG TTTGATATCGGGCGCAGCCTGGACATTGTCTACTACCTGTTCGATGCGCCGTTCCTCAATGGCCAGGACCAACGCGAGGCGCCTGTCGAGGATCGCCGCG CTGCCCTCAAAGCCGCGTTGGCCGGCAGTCGTAGCAAGTTGCTGCGTTTCTCCGAAGCATTCACTGCGCACCATCGCGACATCTTTGAAAGCGCCTGCGA CCTGGCGCTGGAAGGCGTGATCGGTAAACGCCTGGGCAGCCCCTACGTGTCGAGTCGCAGTGCCGATTGGATCAAGCTCAAATGCCGCTTGCGCCAGGAG TTCGTGATTGTCGGCTACACCCGGCCGCAGGGCTCACGCAGTGGTTTCGGGGCGCTGCTGCTGGCGGTGAATGATGATTCCGGGCTGGTGTACGCCGGGC GTGTGGGCACAGGCTTTGATCAGGCGTCGCTGAAGTCGATCTACGCGCAACTTACGCCCCTGGAACGCGGCACGTCCCCCCTGGAAAAACCGCTGACCAG CGCCCAGGCCCGCGGCGTGCATTGGGTGCAGCCGACACTGGTAGGCGAGGTGCAATTCGCCGAATGGACCCGGGAAGGCGTGGTTCGCCAGGCCGCGTTT GTCGGCATGCGTACTGACAAACCCGCTGCGCAGATCATTCATGAGCAACCGCGCACGGCCAAATCCATGAAAACCGCGAAAAAACCCAGCGGCCACGTGA ACATCACCCATCCCGACCGCGTAATCGATAAGCAAAGCGGTACGCAAAAACAGCAACTGGCGCAGTTCTACGACAGCATCAGCGAATGGATTCTGCCCTT CCTGCGTCACCGGCCGGTTTCGCTGCTGAGAGCGCCTGAAGGCATTGAAGGCGAACAGTTCTTCCAAAAGCATTCCGAGCGGCTCGCCATTCCTAACATC AAGCAACTGGACCAGGCGCTCGACCCTGGCCATGCACGCCTGATGGAAATCGACAGCGCCGCCGCATTAATCGGTGCCGTACAAATGGGCACCGTGGAAT TCCACACCTGGGGCGGCACCACCGACAAGATCGAAACCCCGGACCTGTTTGTGCTCGATCTCGACCCGGACCCGGCACTGCCTTGGAAAGCCATGCTGGA AGCGGCGCAACTCACGCTGTCGGTGCTCGACGAACTGGGGCTGCAAGCGTTCGTCAAGACCAGCGGTGGCAAGGGCCTGCACCTGGTCGTGCCACTGGCG CGGCGAGACAATTGGGACACCGTCAAGGCATTCGCAAAGGCCATTGCCCAGTTCATGACCGCGCAATTGCCGGAGCGTTTTACTGCAACGTCAGGGCCCA AAAACCGTGTCGGCAAGATCTTTATCGACTACCTGCGCAATGCACGAGGCGCCAGTACCGTGGCGGCCTACTCCGTGCGCGCACGGCCGGGATTGCCGGT GTCGGTGCCGGTCAGTCGTGAGGAGTTGAAGGGTTTGCGTGGTGCCCAGCAATGGACGGTCGCCAACGTGCATGAGCGTTTAAAGGCGTTGGAGGTTGAT CCCTGGGCCGGGTATGCCAATCGCCAAAAAATCAGCAAGAAGATGTGGGATAAATTGGGCACCCATCCACCGCAGTGA
BLASTN Search
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DIAMOND BLASTX Search (DIAMOND is faster than BLASTX)
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| DNA Sequence Downstream of Gene |
AGAACGCCCGGGACGCCTCTCAGATCAGCACAAAGATCAACGCCAACCCAGCGAAGATCGCCCATTTTTCCAGGTAGTAGCGCGTGCGGTTGCGCTTTTT CAGCGCTTTGCCGCGCAGGCGGATCTTGTATAGGCGGGTGAAGGCGCGGTTGAGCCCACCGGTCTGGTCACCGGCATCGTTAGGCGAGCCCGCAGCGGCC ATGACGGTGCGGCTGAACCAGCGATTGAACGCCGCAGCCCAGCGGTACTTCATCGGGCGCTCGATATCGCAAAACAGGATGATGCGGTTCTGCTGCGTGG TGTTTTCGGCGTAGTGGATATAGGTCTCGTCAAACATCACCGGCTCGCCGTCACGCCAGGAGTAGTTTTCGCCATCCACATTGATGTAGCAGCCCGGGTC ATTCGGAGTATCCAAGCCTAAGTGATAGCGATACGAGCCTGCATACGGGTCGCGGTGGCGCACCAGCCTGGAACCTGGCGGCAGTTCGGCGAACATCGCG
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| Amino Acid Sequence |
>ATP-dependent DNA ligase
MPKPLSDYNRKRDFGITAEPAGSAPAGKREASALSFVIQKHDARNLHYDFRLELDGVLLSWAVPKGPSLDPSQKRLAVHVEDHPLGYGSFEGNIPAGQYG AGDVIVWDRGVWQPHDDPRKAYAAGKLKFTLVGEKLSGDWTLVRTRLKGSGDKQQWLLIKEKDPQARPADDYDIVQAQPNSVLSNASVGKPKAKAKPKPK PKKAVATLPEQFSPQLATLVDRAPEGDWHYEIKFDGYRMLARIRDGEVRLFTRNGHDWTERLPRQAKALQALKLKDSWLDGEVVSLNGDGLPDFQALQNA FDIGRSLDIVYYLFDAPFLNGQDQREAPVEDRRAALKAALAGSRSKLLRFSEAFTAHHRDIFESACDLALEGVIGKRLGSPYVSSRSADWIKLKCRLRQE FVIVGYTRPQGSRSGFGALLLAVNDDSGLVYAGRVGTGFDQASLKSIYAQLTPLERGTSPLEKPLTSAQARGVHWVQPTLVGEVQFAEWTREGVVRQAAF VGMRTDKPAAQIIHEQPRTAKSMKTAKKPSGHVNITHPDRVIDKQSGTQKQQLAQFYDSISEWILPFLRHRPVSLLRAPEGIEGEQFFQKHSERLAIPNI KQLDQALDPGHARLMEIDSAAALIGAVQMGTVEFHTWGGTTDKIETPDLFVLDLDPDPALPWKAMLEAAQLTLSVLDELGLQAFVKTSGGKGLHLVVPLA RRDNWDTVKAFAKAIAQFMTAQLPERFTATSGPKNRVGKIFIDYLRNARGASTVAAYSVRARPGLPVSVPVSREELKGLRGAQQWTVANVHERLKALEVD PWAGYANRQKISKKMWDKLGTHPPQ
BLASTP |
DIAMOND BLASTP (DIAMOND is faster than BLASTP)
Search for conserved domains in this protein at NCBI CDD site
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