Pseudomonas parafulva YAB-1, XB13_RS11225
Cytoplasmic
Cytoplasmic Membrane
Periplasmic
Outer Membrane
Extracellular
Unknown
Sequence Data
| Strain | Pseudomonas parafulva strain YAB-1 contig7, whole genome shotgun sequence. [Details] | |
| DNA Sequence Upstream of Gene |
GTCCAGGGCAGGGCAGACGTGCAGCCCTCAGGGGGTAATCGCCTGCGCCTCAACGCCGGTCAGCAGGCCGACCTTGTGGCGTCAGGTATTCGAAATGTCG GTATCTTCGAGGCATGGCGACTGGGATGGCGTGATGGCGTGTTGCGCCTGGACGATCAGCGGCTAGCCGACCTGCTGGTGGAGTTGAGCCGCTATCGCCC AGGTGTGCTGCGCTGGGATCCGGCGTTGGACAGGCTGCGGGTGACCGGCACCTTCCGACTGGATGACACCGACCAGGTATTGACGCTGCTCGCGGCAAGC CTGCCGGTGCAGGTGGTAGCCCGTACCCGCTACTGGATCACGCTGGTGCCGCGAGCAACGACTGCCTGAAGCTCGAACCCGCCAAGTTCACCCCGAACGC TGCGTTGCGACGCATTGCACGTGATATCAACGAGAAGCTGTCCCCTTTTCCGGACTCGCCTGTCATTACCCCTAGAACACCATAAAGGGGAGCTTTATAG
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| DNA Sequence for Gene |
>XB13_RS11225
ATGCCTGCAGTAAAGTCCATCCACCTGCGCCCATGGGTGCGGGCAGCACGCCCATTGTTCGCCATCAGCCTGCTGCTCGGCACGCCCGCTTGGGCCGATG AGCCAGCCCGGCGCACCTACCAAGTGCCAGCGGCGAGCCTGGGGGCGGCATTGACCCGCTTCGCCGATCAAGCAGGGGTCAGCTTGTCGCTGGACCCAGC GCTGGTCAAGGGCCTGCGCAGCGAAGGGCTGACCGGGCAATACAGCGTCGATGAAGGCTTCACGCAGTTACTGCGCGGCAGCGGTCTGCAATGGGTAGCC GTGGGCCAAGATGCTTTCACTCTCGTGCCGTCGCCCCAGCAAAGTGGCCCGCTGGAAATAGCCCCTACCAGCATCGTCGGTGGCCTACCGGCGACCGACG AGGCACCCCCTTATGCAGGCGGGCAGGTCGCCCGCCAAGGCGCGCAGGGCTTGCTGGGTGCGCGCGATTTCATGGAAACGCCGTTCAGCATCACCAGTTA CACCAGCGACCTCGTGAAGAACCAACAGGCCCGCACCCTGAGCGAACTGGTCGCCAGCGACCCTTCGGTTCGTGCCACCAACCCGGCCGGTGGGCGTTTC GAGCAGTTCACCATTCGCGGTTTCAGCTTGTATAACAGTGATGTGTCCTACAACGGCCTCTATGGCTTGCTACCTACCTATTCGATCGATATGGAGATGG CCGAACGGGTCGACATCATCAAGGGCCCCAGCCAGTTGATCAACGGCATTGCGCCACGGGGTAGCGTCGGCGGCGGCATCAACGTCCAACCCAAACGCGC TGGCGACACGCCGATCACCGAGTTCACCGGCAGCTACGCCTCGGCGGGCCAGGTAGGCGGGGCCGTTGACGTAGGGCGAAGGTTCGGTGAACAGCAGCAG TTCGGCATGCGTCTGAACGCGGTGAAACAGTCTGGCGATACCGAATGGGACCACCAGCAAGTGGACCGCGAAATGGCCGTACTGGGGCTGGATTTTCGCG GCGAGCGCCTGCGGCTTTCGACCGACCTTGGGCATACCGAGCGTGACACCGATGCCCCTCAGGAGCGTGTGCTGGTAGGGGCAAGCGCCCAGGTACCGCG TGCTGGCGATGTGCACCGCAACTACGCCCAGGCGTGGAGCAAGGCGCGCACCAACGATACCTTCGGGGCAGTGCATGCCGAATATGACCTCAGCGATTCT GTGCTGGCCTATGGCGCAGTGGGTGCCCGGGAGAGCCGACACGATTTCCTGCGCCATAACGTCTCTGTGATCAACAATGCTGGCGACTTCACCATCCAGC CCCGCGATTTCAGCAGGGATGAATCGGTACGCACTGCCTTGGCGGGCTTGAGGACCTGGTTGCACACCGGGCCCGTCAGCCACGAGATCAACCTGGCTGC CACGTACTACTACATGGACTTCACCAATGGGGGTGCCCGTTACGCCGCCTCACCCGGCAACCTCTATCATCCGACGGCGACGCCCACGCCAGGTACCCCG ACGCGGCTCGATTCGAAGGATTACACCGAGAACCGTTTCTCTGGGCTGGCGTTGTCCGACACCCTCGGCTTCTTTGATGACCGATTGCTGTTGACCCTGG GGCTGCGCTGGCAGCGGGTGCAGGTGGACGATTGGAGTGATGGGGTCAAAGGCGACACGGCGTATGACGAGAAGAAGGTGTCGCCCTCCGGTGGTGTGCT GTACAAGGTGACGGATGAGCTGTTGGTGTATGCCAACTACATGGAAGGCTTGAGCCAAGGCAAGATCGCACCGTCCACCTCGATCAACGAGGATCAGATT TTCCCGCCTTTCACCAGCCGCCAGGTGGAAGTGGGTGCCAAGTATGACCTGGGCAACGTGGCGTTCACGGCCAGCGCCTTCAGAATCCGTCAGCCTGCCT ATGAAACCAACCCCGGCTCCCGGGTCTTCGGCGCCAATGGCAAGCGCAACAACCGGGGTGTGGAGCTGACCGTGTTCGGTGAACCCACGAAAGGGGTGCG TGTGCTGGGCGGGGTGATGTACATCGACAGTGAGCTGACCGATACCGTGGGGGGTGCCTACGATGGCAACCGTGCGCCCGCAACGCCCGCGTACAACGTC AACCTGGGGGCCGAATGGGATGTGCCGGCGGTCCAGGGGCTGACCCTGACGGCGCGCGGGACGCACTCGAGCTCCCAGTACCTGGACCAGAACAACAGCA AGAAGATCGACGGCTGGGAACGCTATGACCTGGGGGCACGGTACGCCTTCAAGCTGGACGACACGCAGGTGACCCTGCGCGCCAGCGTCGAAAACGTGCT CGACGACCGTTACTGGAGCTCAGCAGGCGCGCCGGATGACGCCGAACCGGGGCTTACCTTGTCGACGCCACGCACTTACCTGCTGTCTGCCACGCTGGGT TTCTGA
BLASTN Search
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DIAMOND BLASTX Search (DIAMOND is faster than BLASTX)
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| DNA Sequence Downstream of Gene |
TCCGGCCAGCCTGAAGCCCGGGGCCAACACTGCGGGTGTCGGGTGTCGCCGGTTCAACCAGGCGCTATTGCGGCGAGCCGAACAGGGCCGTCCAATAGAT GCCGGCATCGCTCTTCGGGTCTACGGCATAGGCTGCGCCGAGGTCCCGGAAGTCGGCGCTCATCAGGACTGCGCAGTGGCCTGGGCTGTCCAGCCAGCCT TGAACCACCTTGTGCGGCGTGTCGCGCCCGGCGGCGATGTTCTCGCCAATCTGCTGGTACAGATAACCGGCAAGCTCGGCCCGATCACCTGGGGTCCGGC CTTCTTTGTCGATGTGATCGAAGAAGTTCTGGTTGGCCATGGCCCGTGTGTGGCCGGCTGCCACTCCGGCCAGCACGGTGTTCCAGCCAAGTGCAGGTGC GGCGGCGTAGGGTTGGCCGCCGCACTGGCGGGGCTGCTGACGCGCGGCGTTGATTTCCTGGAGCATCTTTTGTCCTTCCGCCTGCCAGTCGCCCAAGCGA
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| Amino Acid Sequence |
>TonB-dependent receptor
MPAVKSIHLRPWVRAARPLFAISLLLGTPAWADEPARRTYQVPAASLGAALTRFADQAGVSLSLDPALVKGLRSEGLTGQYSVDEGFTQLLRGSGLQWVA VGQDAFTLVPSPQQSGPLEIAPTSIVGGLPATDEAPPYAGGQVARQGAQGLLGARDFMETPFSITSYTSDLVKNQQARTLSELVASDPSVRATNPAGGRF EQFTIRGFSLYNSDVSYNGLYGLLPTYSIDMEMAERVDIIKGPSQLINGIAPRGSVGGGINVQPKRAGDTPITEFTGSYASAGQVGGAVDVGRRFGEQQQ FGMRLNAVKQSGDTEWDHQQVDREMAVLGLDFRGERLRLSTDLGHTERDTDAPQERVLVGASAQVPRAGDVHRNYAQAWSKARTNDTFGAVHAEYDLSDS VLAYGAVGARESRHDFLRHNVSVINNAGDFTIQPRDFSRDESVRTALAGLRTWLHTGPVSHEINLAATYYYMDFTNGGARYAASPGNLYHPTATPTPGTP TRLDSKDYTENRFSGLALSDTLGFFDDRLLLTLGLRWQRVQVDDWSDGVKGDTAYDEKKVSPSGGVLYKVTDELLVYANYMEGLSQGKIAPSTSINEDQI FPPFTSRQVEVGAKYDLGNVAFTASAFRIRQPAYETNPGSRVFGANGKRNNRGVELTVFGEPTKGVRVLGGVMYIDSELTDTVGGAYDGNRAPATPAYNV NLGAEWDVPAVQGLTLTARGTHSSSQYLDQNNSKKIDGWERYDLGARYAFKLDDTQVTLRASVENVLDDRYWSSAGAPDDAEPGLTLSTPRTYLLSATLG F
BLASTP |
DIAMOND BLASTP (DIAMOND is faster than BLASTP)
Search for conserved domains in this protein at NCBI CDD site
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