Pseudomonas parafulva YAB-1, XB13_RS09265
Cytoplasmic
Cytoplasmic Membrane
Periplasmic
Outer Membrane
Extracellular
Unknown
Sequence Data
| Strain | Pseudomonas parafulva strain YAB-1 contig6, whole genome shotgun sequence. [Details] | |
| DNA Sequence Upstream of Gene |
GTTGCACCTAAAGAGCGCATCAACATCAAGTACGTACCGGCCACCGGCGATGAACAGGCCGAAGTAGAGCTGCCACACAAGATGTTGGTGATGGGCGACT TCGGCCTGGATGATACCCGTGCGCTGGAAGACCGCTCGGTCATACGTATCGATAAACACACCTTCAACAACGTGTTGAATGACGTCGATGTCCGCTTGGC CATGTCCGTGCCCTCCACACTCAGTGCGGCGCCGGAGGCGGAGCTGGCGGTCAACCTGCAGTTCAGGTCAATCAACGACTTCGGACCAGACGGCATCGCC CGCCAAGTACCAGAGCTGAGCAAGCTATTGGAGCTGCGCGAAGCACTGGTGGCCCTGAAAGGCCCACTGGGCAACGTGCCCACGTTCCGCAAGCAATTGC AGCACCTGTTGAGCAACGAGCAGGCCCGCAAACAACTCGCCGAAGAATTGAATCTGGTGCTTGAGGCGCCAAAAGAAGACTGAGACAAAGGAGCGTCCCC
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| DNA Sequence for Gene |
>XB13_RS09265
ATGCCAAAGTCCAACACCACGACCCTAACGGCTGAACTCACTACCGATACATTGAGTAATGCCACCCTGCTCGACCAGATCATGGCCGAGACCAAGTTAG TCCCCGCCCAAGAGGGCTATCAAGTCGCCAGGCAGGGCGTATCGGCCTTTATTACCGAGATCCTCAAAACCCCTGACCCAGATCAATTAATCAACAAGCA CCGTGTTGATCAAATGATTGCCGAGCTGGATCGGGCACTCAGTAACCAGATGGATGCCATCCTCCATCAACCGGCCTTCCAAGCGCTTGAGTCTTCGTGG CGCAGCCTCAAACTCCTGGTAGACCGCACGGACTTCCGCGAGAACATTAAGCTCGAAGTCCTGCATGTCAGCAAAGAAGACTTGCTCGACGATTTCGAGA ACGCTGCCGATATCACCTGCAGCGGCATGTACAAACACGTTTACACCGCAGGTTACGGTCAATTTGGCGGCGAGCCGGTGGCGGCCATGGTTGGCAACTA CAACTTCGGCCCCTCCTCACCTGATATTAAACTGCTGAGTTACATGGCCTCTGTCGGTGCCATGTCGCACGCGCCCTTCCTGGCAGCCCCGTCTCCCGAG TTCTTCAATTTGAGCAGCTTCGAAGCGCTGCCCAACCTGAAAGAGATCAAGGACATCTTCGCGGGGCCACGACATGCCAAATGGCGCGCATTCCGTGAAA GTGAAGATGCCCGCCACACCGCGCTGACCGGGCCGCGTTTCATGCTCCGCTCGGCCTATCATCCGCAAGAAAACCCTGTCCAAAGTTTTCACTACTACGA AAACATCGACGGGCGACACGACAACTACCTGTGGGGCAATTCCGCCTTCCTGCTGGCCAGCTGCATCAACGACAGCTTCGCCCGCTACCGCTGGTGCCCG AACATCATCGGCCCGCAGTCCGGTGGTGCCGTAGAGGACCTGCCAGTGCACCTCTACGAGGCGCTGGGGCAGTTGCAAGCGAAGATCCCAACCGAGGTGC TGATTTCCGACCGCAAGGAGTTCGAGCTGGCCGAAGAAGGCTTTATCGCCTTGACCATGCGCAAGGACAGCGACAACGCCGCGTTCTTCTCGGCCAATTC GGTGCAGAAGCCGAAGAACTTCCCCAAGACCCCCGAAGGCCTGCAGGCCCAGACCAACTACAAGCTGGGCACCCAGTTGCCTTACCTGTTCATCGTCAAC CGCCTGGCCCATTACATCAAGGTGCTGCAGCGCGAGCAGATCGGCAGCTGGAAAGAGCGCAAAGACCTCGAGTCCGAGCTGAACAAATGGATCAAGCAGT ACGTGGCCGACCAAGAAAACCCTTCAGCAGATGTGCGCAGCCGTCGCCCATTGCGAGCCGCGAAGGTCGAAGTCTCAGACGTTGCCGGCGATCCGGGTTG GTACCAGGTTTCGCTCGCCGTGCGCCCGCACTTCAAATACATGGGCGCGAACTTCGAAATTTCGCTGGTCGGCCGGCTCGATACCCAATGA
BLASTN Search
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DIAMOND BLASTX Search (DIAMOND is faster than BLASTX)
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| DNA Sequence Downstream of Gene |
CCGGCTTTTTCGACCGTTTGACTGCGGATCAGTCCATGGCTCGGGAGGCGTCCAGGCAAGAGCGCGCGTCCCATAAGTTCGCCGCCATCAAGCGCCATTT GGAAACACTGCTCAACGCTCGCCAGGGTTGCTCACAGAGCAGCCCTGAGCTGGGCCTACGTGATTTCAATGGCCACGAAGTGAGCAGTGGCGACCTGCTG AAGCAAGTGAGCGCCGATATTCGCCGCACCATCCAGCGCTTCGAGCCCCGCGTGCACGTGCGCTCGCTCAAAGCCATGCCCGATTGCCACGCCCCGCTGG AGCTGCATCTCAGGCTGGACTGTCACGTGCAGGTCAACAACCGCAAGGAGCAGCTACAACTGGAGCTGCTGGTCAACGGCCATAGCCGCCATACCCAAGT GAGGTGACCAATGTCACTCAAGGATCGATTCAGCGAAGAGCTGCGTTACCTGCATGAGCTGGGAAACGACTTCGCCCAAGACAACCCACAACTTGCCCGA
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| Amino Acid Sequence |
>type VI secretion protein
MPKSNTTTLTAELTTDTLSNATLLDQIMAETKLVPAQEGYQVARQGVSAFITEILKTPDPDQLINKHRVDQMIAELDRALSNQMDAILHQPAFQALESSW RSLKLLVDRTDFRENIKLEVLHVSKEDLLDDFENAADITCSGMYKHVYTAGYGQFGGEPVAAMVGNYNFGPSSPDIKLLSYMASVGAMSHAPFLAAPSPE FFNLSSFEALPNLKEIKDIFAGPRHAKWRAFRESEDARHTALTGPRFMLRSAYHPQENPVQSFHYYENIDGRHDNYLWGNSAFLLASCINDSFARYRWCP NIIGPQSGGAVEDLPVHLYEALGQLQAKIPTEVLISDRKEFELAEEGFIALTMRKDSDNAAFFSANSVQKPKNFPKTPEGLQAQTNYKLGTQLPYLFIVN RLAHYIKVLQREQIGSWKERKDLESELNKWIKQYVADQENPSADVRSRRPLRAAKVEVSDVAGDPGWYQVSLAVRPHFKYMGANFEISLVGRLDTQ
BLASTP |
DIAMOND BLASTP (DIAMOND is faster than BLASTP)
Search for conserved domains in this protein at NCBI CDD site
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