Pseudomonas parafulva YAB-1, XB13_RS08275
Cytoplasmic
Cytoplasmic Membrane
Periplasmic
Outer Membrane
Extracellular
Unknown
Sequence Data
| Strain | Pseudomonas parafulva strain YAB-1 contig6, whole genome shotgun sequence. [Details] | |
| DNA Sequence Upstream of Gene |
AAATGGTCAGGGCAGCGGCAGACAGGCGCCCGCGCGCCGCTTTGTTCAGGTCGAAGCGACCAGCACCGTCTTGGTCGGCTTCGCTGCCTTCGGTGCCGAA GGTCAGCGGCAGTGTGATGTGGCTGTCGAACGAAAGCAGGCGTTCCTGCAGGTCATTGGCCTGGCGCATGACGTCCCTGGGGTAGCCTGACGGCGTGTCG AGATAGTCCCAGGCCGCCCACCCGGCACCGGCGGTCACGGCCGCGGCCAGGCTGATATACAAGGCTTTTTTCCAGCGTGGTGTCGTCATCTTGGTCTCAG TAGGTTCACCGTCGAGGGATGGGCTTGGATGCCGCCGCTACCTGGAGGGAACGAGCTGCGATAGCGGAAATTTAAGCGCCCGCCCGTTGACTGAAGACAG GTGCCAGGGCGCACTGCAGCGCTAAATTTCGCCCGCCGAGCCACGTCCTAGCCTTGGATGGGCCGTGCTCCATGGCCGAAGTGAAAGCACAGGTAGGGCA
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| DNA Sequence for Gene |
>XB13_RS08275
ATGACGATTTCTCGACGCGGGTTCATCGCCGGTGTGGCATTGACGGGTATGGCAGTGCCAGGCGCGCGGTACCTGCAGCGGCGGCGAGCCAGTGAAGAGC AATACCCTGAGACCCCCGGCGAGGCGGTGGTGGAACTTGCCGATACGCCTGTCAGGCAGCTGGGCGACACCTTGCGCGGTATCTGGCGCTGGACACCTCA AGGCCGCGAGGCCGGGCTCGCCGGTATGCCGTCAGGGGAGCTTGAGCTTTTCCTGGATGTGGCCTCGAGCGGGCGGGGGTTGCGCGGCTACCTCGACACC CCTGAACGTTTGCGCAGCACCCTGGAGCCACGCTATCGGGTGGTGGCTGACTTGTTGCTCGACCGACCAGGGACACTGCGCTGGCGGCTGTTGGCCACGG ACGCCAACCCCCTGGGGGCACGCTACGAGTGCCAGGTTGTGCTTGACGAGGTCTGGGGGGCGTACGGCAACGCAGGACCTGCGACCTTGAGCGGGCACGT GGTGGCGCTTGAGCGGCCACTGGCGCTGCCCGTGCAGGACAACCGTTTCCTGGCGCTGAAAAGAACGTTCCCCGAAGCGCGGGAGCGCACGCCATTGTCG GCGCCGTTACTGGCGAAGCTGATCGCGCCGGAACACCGGCTGTTTCACCAGCTCTGGCATGCGTCGCGGGACAAGTGGCACAAGCTCGATGACGAAAAGC GCGGTGCGTTGCGCGGGCTTGGCTGGCAGCCAGGGCCGAGGGCGCGCGAGCGTGATGCACGGGACCGGCACAAGGACCGCAACGGCTCCGGCGAGGACTT TCTGTTCATGCATCGGCACATGCTGGGCAACGCCAGGGCCATTGAGCCGTTACCGTCGTGGCCGCGTTTTCCTTTGCCCCAGCCAGCGCTCGAGCGCGAC CGCGTAGGGTTCGCAGCCTACTTCGACAACCATGACGGCAACGCCTTGCCGCCGACATGGCTGGCCGATGATGACGAGGAGTACACCCAGTGGGTGCGTG ACATCAAGAGCCCGGACACGTTCTACGGCAACTTCCAGGTCTGGGAGTCGCGCTACAGCGATCCGCATTACCTCAGTACCTTGACCTTGGGGCAGTTTGG CTCAGAACTGGAGCTGGGCTTGCATGACTGGCTGCACATGCGCTGGGCCTCGGTGCCGCGCGATCCGGCCAACGGCATGCCGGTGCCGATGGCGCGCACG CCCGACGACTATGCCCAACGCTGGTATGGCGCCGAGAACGATTTTCTCGGCGACCCTTTTTCATCCCATGTGAACCCGGTGTTCTGGCGCTTTCATGGCT GGATCGACGACCGCATCGAGGACTGGTTCCAGGCCCATGAACGGCTTCATCCTGGTGAAGTGCGGCGCCTGGACGTCAACGGCGTGCCCTGGTTCGCGCC GGGGCGATGGGTGGAAGTTGCCGACCCCTGGCTGGGGCCTGATACCCATGGATGCTCCACAGTGCCTGGGCTGCGCCCAGGGCGGAGTGTGGAGATGGAC CCGGAGACCATGAAGCTGGCCCTGCGCATCATCTATGCCGAGGATGATCGTTTCGCCGCGTTACGGCCCAAGGTGCCGCAGCGGCCATGGTATGCCCGGC ATATCAAGGTGACGCGGCCATTGCGGTGA
BLASTN Search
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DIAMOND BLASTX Search (DIAMOND is faster than BLASTX)
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| DNA Sequence Downstream of Gene |
GGGTTCATGGAGATTCATGCCGCGATAGGCCGCGCAGCGGCCTCGGCGACCCTGGCGTTTTTCCAGCCCAGCGTTGCGCCTAAGGGGCATCACCGCCCAC CTGCCACCCACCACCGAGCGCCTTGTAAAGCGCCACGCTCGCTTGCAAGCGGGCCAGGCGAAGCGTTGCCTGCTGATCCTGGGCTACATACAGCGTGCGC TGGGTTTCCAGCACGGTCAGTACGGTCTCGGCGCCTGCCCCATAGCGCTGTTCGGCCAGGTCAAAGGCCAGTTGAGCTTGTCGCACTTCTTCGTCCTGCC AGTGGCGTTGGCGGTCGACACCGTCCAGGGCATTGAGCGCCTTCTCCACATCGCTCAGGCCAGCGAGAATGCTGCTGCGATACTGCTCCAGCAGTTCGGC CTGCTCGGCCTCGGCCAGATCGCGGGAAGCCCTGAGCCTGCCGTTGTCGAAAATCGGCGCAAGCAGACCAGAGGTCAGGGTGTAATAGGGGCTTTCCAGC
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| Amino Acid Sequence |
>PvdJ/PvdD/PvdP-like protein
MTISRRGFIAGVALTGMAVPGARYLQRRRASEEQYPETPGEAVVELADTPVRQLGDTLRGIWRWTPQGREAGLAGMPSGELELFLDVASSGRGLRGYLDT PERLRSTLEPRYRVVADLLLDRPGTLRWRLLATDANPLGARYECQVVLDEVWGAYGNAGPATLSGHVVALERPLALPVQDNRFLALKRTFPEARERTPLS APLLAKLIAPEHRLFHQLWHASRDKWHKLDDEKRGALRGLGWQPGPRARERDARDRHKDRNGSGEDFLFMHRHMLGNARAIEPLPSWPRFPLPQPALERD RVGFAAYFDNHDGNALPPTWLADDDEEYTQWVRDIKSPDTFYGNFQVWESRYSDPHYLSTLTLGQFGSELELGLHDWLHMRWASVPRDPANGMPVPMART PDDYAQRWYGAENDFLGDPFSSHVNPVFWRFHGWIDDRIEDWFQAHERLHPGEVRRLDVNGVPWFAPGRWVEVADPWLGPDTHGCSTVPGLRPGRSVEMD PETMKLALRIIYAEDDRFAALRPKVPQRPWYARHIKVTRPLR
BLASTP |
DIAMOND BLASTP (DIAMOND is faster than BLASTP)
Search for conserved domains in this protein at NCBI CDD site
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