Pseudomonas parafulva YAB-1, XB13_RS07695 (flhF)
Cytoplasmic
Cytoplasmic Membrane
Periplasmic
Outer Membrane
Extracellular
Unknown
Sequence Data
| Strain | Pseudomonas parafulva strain YAB-1 contig6, whole genome shotgun sequence. [Details] | |
| DNA Sequence Upstream of Gene |
AAAGTCCTACAGGCTTTGTTGTCAGAACAGGTGCCAGTGCGCGATATTCGTAGCATTGCCGAATCCATCGCCAACAACGCGGCAAAGAGTCAAGATACCG CCGCTTTGGTCGCGGCCGTGCGCGTCGGATTGTGTCGCGCCATCGTGCAAAGCATTGTTGGCGTTGAGTCCGAGCTGCCTGTGATCACTTTGGAGCCCAG GTTGGAACAGATCTTGCTCAATAGTCTGCAGAGGGCCGGGCAAGGTCAGGAAGACGGAGTGCTTCTTGAGCCGAGCATGGCCGAAAAGCTGCAGCGTTCG CTGATCGAAGCCGCACAGCGTCAGGAGATGCAAGGCCAGCCGGCCATCCTCCTGGTTGCTGGCCCGATCCGTGCCATGCTGTCGCGTTTCGGTCGGCTGG CCGTACCGAATTTGCATGTGCTGGCGTATCAGGAAATACCGGACAACAAGCAAGTCACCATCGTTGCCACCGTGGGCCCTAATGGCTGAGGTAGTGGATA
|
|
| DNA Sequence for Gene |
>XB13_RS07695
|flhF
ATGCAAGTTAAGCGATTCTTCGCCGCTGATATGCGTCAGGCCATGAAGCTGGTGCGCGATGAGCTGGGCGCTGATGCGGCCATCATCGGCAATCGCCGTA TCGCAGGCGGGGTCGAACTGACCGCCGCGCTGGACTACAAGCTGTCCGCCCTGGCACCTCGGGTACCGAACGTCGAACTCGAAGAAGAGCTTCGCAAGAC GCACACGCGCATCGCCACGGCCAAGGCCGAGCTCGATCAGCGCCCGGACAGCAGCGACAGCAATCGCCAACTGTTCGCCGGTCAATCGCTCACGGCGGCC GAGCCCTTGGTCGAGCCGCATGTCGATACCCCGCAGCCGGCCGCCACCGCAAGCAGCCAGGCCTCGGTGGACCCGCGCCTGTTCGATGCCATGCGCTCGG AGCTGTCCGGCTTGCGCGAACTGCTGGAAGTGCAGCTGGGGTCGCTGGCCTGGACCCAGCTGCAAGGTAGCAAGCCGCAGCAGGCCACGTTGTGGCGCCG GCTGCAGCGCATCGGCCTGTCTGGCCCCATTGCCCGCGAATTGCTCGAGCTGACCAAGGACATCGAGGAGCCTCGCCACGCCTGGCGTATGCTGCTGGCG CACCTGGCGCGCATGATCCGTACGCCTGACGTCGAACCGATCGAGGACGGCGGCGTGATTGCCGTCGTCGGCCCAGCCGGCATGGGCAAGACCACCACCC TGGCCAAGCTCGCGGCGCGTTATGTGCTCAAGTACGGCGCCCACAACCTGGCGCTGGTGAGCATGGACAGTTTTCGCATCGGCGCCCAGGAACAGCTCAA GACCCTGGGCCGGATCCTGAATGTGCCGGTCACCTATGTCGACCCCGGTCAGTCGTTGGCGGCGGCGCTCGAGCCGCTGCTGCGCAAACGCGTGGTGCTG ATCGATACGGCCGGCCTGCAAGCCAGCGACCCGGCCTTGCGCATGCAGCTCGATACCCTGGCCGGTCGCGGTATCGCTGCGAAGAATTACCTGGTCCTGG CCACCACCAGCCAGAAGCAGGTGCTGACCGCGGCCTACCACAGCTACAAGCGCTGCGGGCTGGCCGGCTGCATCCTGACCAAACTCGACGAGTCGGCAAG CCTGGGCGATGTCCTGAGCCTTGCCATCAGTTTCCGACTGCCCGTGGCCTACCTTACCGATGGGCCGCGTATCCCGGACGATCTGCACTTGCCCCGTGGG CACCAGCTGGTCACCCGCGCGGTCAATGTGCAGCAGCAGGACGAGCCCAGCGAGGAGGCCATGGCCGACATGTTCGCTGATCTCTACCACAACCCACGGC GAGCGGGTTGA
BLASTN Search
|
DIAMOND BLASTX Search (DIAMOND is faster than BLASTX)
|
|
| DNA Sequence Downstream of Gene |
AAATGAAATGTGTGCAAGGTAGCTATGCCAAGGGGTACGCAGCATTGCCCTTCGTGTGGCATGAGTCCCAGCGAGACAAGGTAAAGAACAGACATGGGTA GCATGCATCCCGTACAGGTGATCGCCGTGACCGGTGGCAAAGGTGGCGTCGGCAAGACAAATGTTTCAGTGAACCTGTCTCTGGCGTTGGCCGAGCTGGG CCGCAGGGTCATGCTGCTCGACGCCGACCTGGGCCTGGCCAATGTCGATGTGTTGCTGGGCCTTGCGCCCAAGCGCACGCTGGCCGATGTCATCGAGGGG CGTTGCGAACTGCGCGATGTGATGCTGCAGGGCCCGGGCGGTGTGCGCATCGTCCCGGCCGCTTCGGGCACCCAGAGCATGGTACACCTTGCGCCTGCCC AGCATGCGGGTCTGATCCAGGCGTTCAGCGAAGTCGGCGACAACCTCGATGTGCTGGTGATTGATACTGCGGCCGGCATCGGCGATTCGGTGGTCAGCTT
|
|
| Amino Acid Sequence |
>flagellar biosynthesis regulator FlhF
MQVKRFFAADMRQAMKLVRDELGADAAIIGNRRIAGGVELTAALDYKLSALAPRVPNVELEEELRKTHTRIATAKAELDQRPDSSDSNRQLFAGQSLTAA EPLVEPHVDTPQPAATASSQASVDPRLFDAMRSELSGLRELLEVQLGSLAWTQLQGSKPQQATLWRRLQRIGLSGPIARELLELTKDIEEPRHAWRMLLA HLARMIRTPDVEPIEDGGVIAVVGPAGMGKTTTLAKLAARYVLKYGAHNLALVSMDSFRIGAQEQLKTLGRILNVPVTYVDPGQSLAAALEPLLRKRVVL IDTAGLQASDPALRMQLDTLAGRGIAAKNYLVLATTSQKQVLTAAYHSYKRCGLAGCILTKLDESASLGDVLSLAISFRLPVAYLTDGPRIPDDLHLPRG HQLVTRAVNVQQQDEPSEEAMADMFADLYHNPRRAG
BLASTP |
DIAMOND BLASTP (DIAMOND is faster than BLASTP)
Search for conserved domains in this protein at NCBI CDD site
|