Pseudomonas parafulva YAB-1, XB13_RS07105
Cytoplasmic
Cytoplasmic Membrane
Periplasmic
Outer Membrane
Extracellular
Unknown
Sequence Data
| Strain | Pseudomonas parafulva strain YAB-1 contig6, whole genome shotgun sequence. [Details] | |
| DNA Sequence Upstream of Gene |
CAGAAGAACATCGGCCCCAGCGGGCTGGTGGTGGTCATCGTGCGTGAAGACCTGCTGGGCCATGCCCGCAGCAGCTGCCCGACCATGCTCGACTACAAGG TTTCGGCAGACAATGGCTCGATGTACAACACGCCTGCGACTTATGCCTGGTACCTCTCGGGCCTGGTCTTCGAGTGGTTGAAGGAGCAGGGCGGCGTGGA CGCCATGGAGCAGCGCAACCGTGCCAAGAAAGACCTGCTGTACGGGTTCATCGATGCCAGCGCGTTCTACAGCAACCCGATCAGCGTCAATGCCCGGTCG TGGATGAACGTGCCGTTCCGTCTGGCCGACGAGCGTCTGGACAAGGCCTTCCTGGCCGGTGCCGACGCCCGTGGCCTGCTCAACCTCAAGGGACACCGGT CAGTCGGAGGCATGCGTGCATCCATCTACAATGCCTTGGGTCTGGATGCGGTCGAAGCCCTGGTGGCCTACATGGCTGAATTCGAGAAGGAGCACGGTTG
|
|
| DNA Sequence for Gene |
>XB13_RS07105
ATGTCCGAGCATGAACTGCAGGCGCTGCGTGTGCGCATCGACAGCCTCGACGAAAAGATTCTCGAGCTGATCAGCGAGCGTGCCCGCTGCGCCCAGGAAG TGGCCAAGGTCAAGACGGCGTCGTTGGCCGAGGGCGAGGCGCCGGTGTTCTATCGTCCCGAGCGCGAGGCTGCCGTGCTCAAGCGCGTGATGGAGCGCAA CAAGGGCCCGCTGGACAACGAGGAGATGGCGCGGCTGTTCCGCGAGATCATGTCCTCGTGCCTGGCATTGGAAGAGCCGCTCAAGATCGCCTACCTGGGC CCTGAAGGCACCTTTACCCAGGCCGCCGCCATGAAGCATTTCGGTCATGCGGTAGTCAGCCGCCCGATGGCGGCCATCGACGAGGTGTTCCGCGAAGTGG CGGCCGGGGCCGTGAACTTCGGCGTGGTGCCGGTGGAAAACTCCACCGAAGGCGCAGTGAGCCACACCCTGGACAGCTTCCTCGAGCACGACATGGTGAT CTGTGGCGAAGTGGAGCTGCGTATTCACCACCATCTGCTGGTGGGCGAGAACACCAAGACCGACAGTATCAGCCGCATCTACTCCCATGCCCAGTCATTG GCCCAGTGCCGTAAGTGGCTCGATGCCCACTACCCCAATGTCGAGCGGGTAGCGGTGTCGAGCAACGCCGAGGCTGCCAAGCGGGTCAAGGGTGAGTGGA ACTCGGCGGCCATCGCCGGCGACATGGCGGCCAACCTGTACGGGCTGACCCGCCTTGCCGAGAAAATCGAGGACCGCCCGGACAACGCCACGCGGTTCCT GATGATTGGCAGCCAGGAAGTGCCGCCCACTGGGGACGACAAGACCTCGATCATCGTCTCGATGAGCAACAAGCCCGGTGCCCTGCACGAGCTGTTGGTG CCGTTCCACCAGAACGGCATCGACCTGACCCGCATCGAGACCCGGCCTTCGCGCAGTGGCAAGTGGACGTATGTCTTCTTCATCGACTTCGTCGGTCATC ACCGCGATCCGTTGATCAAGGCAGTGCTCGAACAGATCAGCCAGGAGGCGGTGGCGCTGAAAGTGCTGGGGTCTTATCCGAAGGCGGTGCTTTGA
BLASTN Search
|
DIAMOND BLASTX Search (DIAMOND is faster than BLASTX)
|
|
| DNA Sequence Downstream of Gene |
AGCGCAACCTTCCGGGCCGATGCATGGCCCCGTAAGCCCTCAAGGACTGCCTCGATTTTCGTACAGGGTTCATACCAGTGGTAAAAGCAGCAAAAACCAA ACCCGCCCCGATCATCGACCGCCTGGTGGTGGTCGGTCTCGGTCTGATCGGTGGCTCGTTCGCCAAAGGCCTGCGTGAAAGTGGCCTGTGCCGCGAAGTG GTCGGCGTCGACCTCGATGCGCCTTCGCGCAAGCAGGCCGTTGCCCTGGGCGTGGTCGACCGCTGCGAAGAGGACCTGGCCACGGCCTGCATTGGCGCCG ACGTGATCCAGCTGGCCGTGCCGATCCTGGCCATGGAGAAAGTCCTGGCGCGCCTGGCCCGGCTCGATCTGGGTGAGGCCGTGATCACTGACGTCGGCAG CGCCAAGGGTAACGTCGTGCGCGAAGCGCGTTCGGTCCTTGGCGAGCGCTTGTCGCGCTTCGTGCCTGGCCACCCCATCGCCGGCTCCGAGCAGAGCGGG
|
|
| Amino Acid Sequence |
>chorismate mutase
MSEHELQALRVRIDSLDEKILELISERARCAQEVAKVKTASLAEGEAPVFYRPEREAAVLKRVMERNKGPLDNEEMARLFREIMSSCLALEEPLKIAYLG PEGTFTQAAAMKHFGHAVVSRPMAAIDEVFREVAAGAVNFGVVPVENSTEGAVSHTLDSFLEHDMVICGEVELRIHHHLLVGENTKTDSISRIYSHAQSL AQCRKWLDAHYPNVERVAVSSNAEAAKRVKGEWNSAAIAGDMAANLYGLTRLAEKIEDRPDNATRFLMIGSQEVPPTGDDKTSIIVSMSNKPGALHELLV PFHQNGIDLTRIETRPSRSGKWTYVFFIDFVGHHRDPLIKAVLEQISQEAVALKVLGSYPKAVL
BLASTP |
DIAMOND BLASTP (DIAMOND is faster than BLASTP)
Search for conserved domains in this protein at NCBI CDD site
|