Pseudomonas parafulva YAB-1, XB13_RS06785
Cytoplasmic
Cytoplasmic Membrane
Periplasmic
Outer Membrane
Extracellular
Unknown
Sequence Data
| Strain | Pseudomonas parafulva strain YAB-1 contig5, whole genome shotgun sequence. [Details] | |
| DNA Sequence Upstream of Gene |
CGCGCTGGGCGGCGGCTTGGGCACGCAGGCGGCGCTCGCGGGCGCGTTTCTCCAGCGGCCAGCGCACCAGCACGAACAGGAAATACAGCACGAAGGCGAT CATGCCGTACATGGCAAAGTCCGATACTGCGCGCCAGGCGTTGTTGCCCACTTTGAAGGCGACGTCCAGCACCGTGATGGCAATGGCCGGAGCGAAGCTG TCCTTGACTGGGTCGACCACGGTCGGCGTAAGCAGCAGCACCGCCAGCACGACGCGCAGTGGTTCGCGCAGCCAGCGCCACATCCAGCCGGTGAGCTTGA AGCCCACCAGAAGGCAGCCCAAGGCGGCCACGGCGTAGAGGCCCCAGGCCAGGGTGTAGTCGTTCTCGATCATGGTAATCGTGCAAGCCAGGCAAAGAGG TGCCTATGATAAACACATTTCCTGGCGCAAACAGTGTTTGCCTGTACCGGCACGCCAACGAAGCTGCCGGCAGCGCCCTTCAAGAACCGAGAGAAATTCG
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| DNA Sequence for Gene |
>XB13_RS06785
ATGCCAAGCACCCACTTGCCGCCCCTGGCCAGAGCCGACGACGCGACCGACCCCTATGCGTGGCTGCAACAGCGTGACGAGCCCCAGGTACTGGCCTACC TCGAAGCGGAAAACGCCTACCAGCAAGCCTGTCTGGCTCATCAGGCCCCGTTGCGCGAGCAGTTGTTCGAGGAGATCAAGGGCCGCATCCAGGAAACCGA TCTGTCCCTGCCTTCGCCATGGGGGCCCTACCTGTACTACACCCGTACCACCGCTGGCGATGAATACCCCCGCCATTACCGCTGCCCACGCCCTGGCGAT GATTCCAACACGGTCGATGAAGGCCAGGAGCAACTGTTGCTGGACCCCAACGCCCTGGCAGGCGGCGGCTTTCTTTCGCTGGGGGCGTTCAACGTTAGTC CCGACCATCGCCTGTTGGCCTATAGCCTGGACACCAGCGGGGACGAAATCTACACCTTGTACGTCAAGGATCTGGCCACAGGCGATGTAACCACCCTGCC CTTCGACGGCTGCGATGGCAGTCTGACCTGGGCCAATGACAGCCGCACGCTGTTCTTCGCCGAACTCGACGATACCCATCGCCCTTGGCGGCTGTACCGG CATACGTTGGGTCAGGACGGTGCCCAGCGGGTGTTCGAGGAGCCCGATGGCCGGTTCTTCCTGCACTGTTACCGCACCAGTTCCGAACGCCAATTGGTGC TGCTGCTCAACAGCAAGACCACTAACGAAGCCTGGGTGCTGGACGCGGCCACGCCGCAAGCGCCGTTCACCTGCCTGGCACCGCGCGTGGAAAGCCATGA ATACTTCCCCGATCATGGCCTGCTCGATGGGCAGTGGCGATGGTTCATCCGCACCAACCAGGACGGCATCAACTTCGCCTTGTATCACGCCCCAGTCGAC CCCGTGCCTAGCCGCGCCCAGTGGCAGCTGTTGGTAGGCCATCGCGATGACATCATGCTCGAAGGGCTGAGCCTCAATGCCAGCGCGTTGACCCTGAGTC TGCGTGACGGCGGGCTGCCGATCATCGAAGTGCGCCCACAGGGGCTGGCGCCCTACCGGGTGGCTTTACCCGACGCCGCCTATAGCCTGTACGTGCAGGA CAGCCTGGAATTCGACAGTCCTCGGATACGCTTGCGCTACGAGGCGCTGAACCGGCCGGCCCAGGTGCGGCAGCTGGCGCTGGCCACTGGCGCGCAGGAA GTGCTCAAGCAGACGCCGGTGCTGGGGCCCTTCGATGCCGACGCTTATGTCAGCGAACGCCTGTGGGCCACCGCCGCAGATGGCACCCAGGTACCGATCA GCCTGGTGCGACGGCGTCAGGATGTGGGCCGCACGACACCGCTCTACCTGTACGGATACGGCGCTTATGGCGAGAGCCTGGACCCGTGGTTCTCCCATGC GCGGCTGAGCCTGCTGGAACGTGGCGTGGCGTTTGCCATTGCCCATGTGCGCGGCGGCGGCGAGCTGGGCGAGGCCTGGTACCGTGCCGGCAAGCAGGAG CACAAGTGCAATACCTTCAGCGACTTCATCGCATGCGCCGAACACCTGATCAACGAGGGCGTGACGTCCCCCGCCACCCTGGCCATCAGCGGGGGGAGTG CTGGCGGGCTGCTGATCGGCGCCGTGTTGAACCTGCGTCCCGAGCTGTTTCGCTGTGCCATCGCCGAGGTGCCGTTCGTGGATGTCCTCAACACCATGCT CGACCCTGAGCTGCCGTTGACGGTGACCGAGTATGACGAATGGGGCAATCCCGAGGTACCTGAGGTGTATGAGCGCATCAAGGCCTATGCGCCGTATGAG AACGTGAAAGCCCAGCCTTACCCGGCGATGTTGGTGGTGGCCGGCTACAACGACAGCCGGGTGCAGTACTGGGAAGCGGCCAAGTGGGTCGCCCGCCTGC GTACGCGCAAGACCGATGACAACTTGCTGCTGCTCAAGACCGAAATGGGTGCCGGACACGGGGGTATGAGCGGGCGTTACCAGGGGTTGAAGGATGTAGC CCTGGAGTACGGGTTTGTGCTGGGTGAGCTGGGGGTTGCCTGA
BLASTN Search
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DIAMOND BLASTX Search (DIAMOND is faster than BLASTX)
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| DNA Sequence Downstream of Gene |
GGTTTCGAGCTGTTTGTGTGTGTGAGGCGGCCCCAGCGGCCTTGGCGTTCGTGTTCGGTTGTGGCGCTATCGGCAACGCTAGGACAGCCGCCTTCGCTCA CTCCTGGTCCCGCACCGGTTTCTCTGCATCCTGCCGCAACCCTGGTAAAGGCTGGTCCTTTGGCGGGCCAGGCACTGGCATTGGCGGTAGCAAAGGTGCC CCTTGGGAAGTGCCGGTGGCCTTGGGCGGGCTGCTTGGGGTGATCTGCGGATACGGCGTGGGGGTAGGCGTGCCCGGCGCGCCGGGTACAGGTGTGGTCA ACCGGGGTGGCGTGCTGGCAGCGTGAGCCGCAGGCACGCCTGCCGCCAGGACAACGGCGAGAATCGCAGCAAGCATCGGCAACCTCCTGTTCAGAACCTT CCTACAGGCTACGCCCATATGACATTTTTCGCCTGTGCGCCGATCATGCAGCCGCGCTAGACTCGACGGCATAACCGTCATTTGCCTGATCAGAACGAAG
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| Amino Acid Sequence |
>peptidase S9
MPSTHLPPLARADDATDPYAWLQQRDEPQVLAYLEAENAYQQACLAHQAPLREQLFEEIKGRIQETDLSLPSPWGPYLYYTRTTAGDEYPRHYRCPRPGD DSNTVDEGQEQLLLDPNALAGGGFLSLGAFNVSPDHRLLAYSLDTSGDEIYTLYVKDLATGDVTTLPFDGCDGSLTWANDSRTLFFAELDDTHRPWRLYR HTLGQDGAQRVFEEPDGRFFLHCYRTSSERQLVLLLNSKTTNEAWVLDAATPQAPFTCLAPRVESHEYFPDHGLLDGQWRWFIRTNQDGINFALYHAPVD PVPSRAQWQLLVGHRDDIMLEGLSLNASALTLSLRDGGLPIIEVRPQGLAPYRVALPDAAYSLYVQDSLEFDSPRIRLRYEALNRPAQVRQLALATGAQE VLKQTPVLGPFDADAYVSERLWATAADGTQVPISLVRRRQDVGRTTPLYLYGYGAYGESLDPWFSHARLSLLERGVAFAIAHVRGGGELGEAWYRAGKQE HKCNTFSDFIACAEHLINEGVTSPATLAISGGSAGGLLIGAVLNLRPELFRCAIAEVPFVDVLNTMLDPELPLTVTEYDEWGNPEVPEVYERIKAYAPYE NVKAQPYPAMLVVAGYNDSRVQYWEAAKWVARLRTRKTDDNLLLLKTEMGAGHGGMSGRYQGLKDVALEYGFVLGELGVA
BLASTP |
DIAMOND BLASTP (DIAMOND is faster than BLASTP)
Search for conserved domains in this protein at NCBI CDD site
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