Pseudomonas parafulva YAB-1, XB13_RS06305 (relA)
Cytoplasmic
Cytoplasmic Membrane
Periplasmic
Outer Membrane
Extracellular
Unknown
Sequence Data
| Strain | Pseudomonas parafulva strain YAB-1 contig4, whole genome shotgun sequence. [Details] | |
| DNA Sequence Upstream of Gene |
ATTTTGCCTTGCCGCTGGCACGGAACGCTCGTGAGGTGGTGGCGGTAGAGGGCGTGCAGGCCATGGTCGATCGCGCGGCGGCTAACGCCCGCGGCAACGA TGTGCATAACGCGCAGTTTTTTCAGGCCGATTTATCGCAGCCGTTGACGGGCATGGAATGGGCCGCCGAGGGCTTTTCTGCGGTACTCTTGGACCCACCG CGCGACGGTGCATGGGAGGTGGTGCAAGGCATCGCCCGTCTTGGGGCCAAGCGGCTGGTCTATGTATCGTGCAACCCGGCCACACTGGCGCGAGACGCCC AAGTGCTGGTCGGGCAGGGGTACCGGTTAACAAGGGCCGGGATTCTCGACATGTTTCCTCAAACGGCGCATGTCGAAGCCATGGCGTTATTCGAAGTGGG CTAGCCAGCTGGCCCCTTGGTGCGGCTTCCAGGGAATGGCAGCCGTGCGGTGATTGCCAGTGCACCCGCAGGGTGCGCTGTATGGAAAGGTAAAACAAAG
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| DNA Sequence for Gene |
>XB13_RS06305
|relA
ATGGTACAGGTGAGAGTGCACCAGCCGGTCAATACCGACGGCAGTATCAATCTCGAAGCGTGGTTGGACCATGTGGTCAGCGTCGATTCGGCGCTCGACC GCGCAGCGCTCAAAGAGGCCTGCGAGTTTGCCCAGGAAGTCGAGAAGAAGGGCAACCCGGCCAAGCATTCCTGGGCCGATGGTACGTCGAGCTATCAGGC AGGTCTTGAGATCGCCGAGATCCTCGCGGACCTCAAGCTTGACCAGGACTCCCTGGTAGCGGCGGTCATCTACCGCGCTGTGCGAGAAGGCAAGGTCACC CTGGCCGAAGTCAGCCAGCGCTTCGGGCCGGTCGTGTCCAAGCTGATCGATGGCGTGCTGCGCATGGCTGCGATCAGTGCCAGCCTCAGCCCCCGCCAGT CGCTGGTGCTCGGCTCCCAGGCGCAGGTCGAGAACCTGCGCAAGATGCTGGTGGCGATGGTCGACGACGTTCGCGTGGCGTTGATCAAGCTGGCCGAACG CACCTGTGCCATTCGGGCGGTCAAGTCCGCTGACGACGAGAAGCGCCTGCGGGTGGCGCGGGAAGTGTTCGACATCTACGCCCCCCTGGCCCACCGTCTG GGTATCGGGCATATCAAGTGGGAACTGGAAGACCTGTCGTTCCGCTACCTCGAGCCCGAGCAGTACAAGCAGATCGCCAAGCTGTTGCACGAGCGCCGCC TGGACCGTGAACGCTTCATCAGCGATGTCATGAACCAGTTGCAGAACGAACTGCTGGCCACCGGGGTGAAGGCGGACATCAGTGGCCGCGCCAAGCACAT CTACTCGATCTGGCGCAAGATGCAGCGCAAGGGCCTGGAATTCAGCCAGATCTACGACGTGCGCGCCGTGCGGGTGCTGGTCCCCGAGATACGCGACTGC TACACCGCCCTGGGTATCGTGCACACCTTGTGGCGTCACATCCCCAAGGAATTCGACGACTACATCGCCAACCCCAAGGAAAACGGCTACCGCTCCCTGC ACACGGCTGTGATCGGCCCGGAAGGCAAGGTGCTGGAAGTGCAGATCCGCACCCACGGCATGCACGAAGAAGCGGAGCTTGGCGTCTGTGCCCACTGGCG ATACAAGGGCACCGACGTCAAGCCCAGCTCAAACCACTACGAAGAAAAGATTTCCTGGCTGCGCCAGGTACTGGAGTGGCATGAAGAACTGGGCGACATC GGGGGGCTGGCCGAGCAACTGCGGGTCGACATCGAGCCCGACCGGGTGTACGTATTCACCCCGGACGGTCACGCCATCGACCTGCCAAAAGGGGCGACGC CCCTGGACTTCGCCTACCGGGTACACACCGAGATCGGCCACAACTGCCGGGGTGCCAAGATCAACGGGCGCATCGTGCCGCTCAACTACAGCCTGCAGAC TGGCGAGCAGGTCGAAATCATCACCAGCAAGCATGGCAACCCGAGCCGTGACTGGCTGAACTCGAACCTGGGCTATGTCACCACCTCGCGCGCGCGGGCC AAGATCGTGCACTGGTTCAAGCTGCAGGCGCGCGACCAGAACGTTGCCGCCGGCAAGACGCTGCTCGAACGCGAGCTCAGCCGGTTGGGCCTGCCGCAGG TCGACTTCGAGCGCCTGGCCGAGAAGACCAACGTCAAGACGGCCGAGGACATGTTTGCGTCCCTGGGGGCTGGGGACCTGCGCCTGGCGCACCTGGTCAA CGCGGCGCAACAGCTGCTGGAGCCTGAGCGCATCGAGCAGATCGAACTGGTGCCGCGCAAGCCCAGTGGGCCGCGTGGGGGTAAGCGTGGCGACATCCAG ATCCAGGGCGTGGGCAACCTGCTGACGCAGATGGCCGGTTGCTGCCAGCCCTTGCCTGGCGATGCCATCGTCGGCTACATCACTCAGGGGCGCGGGGTGA GCATCCACCGCCAGGATTGCGCCTCGGTGTTGCAGCTGGCCGGCAAAGAGCCAGAGCGCATGATCCAGGTCAGCTGGGGGCCGATACCGGTACAGACCTA TCCGGTCGATATCGTCATCCGTGCCTATGACCGCCCCGGTTTGCTGCGCGATGTTTCCCAGGTGCTGCTCAACGAGAAGATCAACGTGCTGGCGGTCAAC ACCCGCTCGAACAAGGAAGACAACACGGCGCTGATGTCGCTGACCATCGAGATTCCCGGTTTGGACGCCCTTGGGCGCTTGCTGGGGCGTATCTCGCAGT TGCCGAACATCATCGAGACACGGCGTAATCGTACGCCCTGA
BLASTN Search
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DIAMOND BLASTX Search (DIAMOND is faster than BLASTX)
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| DNA Sequence Downstream of Gene |
ACCACGTGTGCACGATTTGCGGGTAGACCGCCTCACCTGTGGGGCCGGTTTGCCCGCCAAGCCCGACCGTCAAGGACTTGCCTGAATGACCTACACCCTC CAGGACCTGCTTCACCTCATGGCTCGCTTGCGCGACCCGCACTACGGCTGCCCCTGGGACCTGAAGCAGGACTATGCCAGCATCGTCCCGCACACCCTCG AAGAAGCTTACGAGGTGGCGGACACCATCGAACGCGGCGATTTCGAGGACTTGCAAGGCGAGTTGGGTGATCTGCTGTTCCAGGTGGTCTACTACAGCCA GCTTGCTCGGGAGGAGGGCCGTTTCGCGTTCGACGGCGTGGTGGATGGCATCACCCGCAAGCTTATTCGTCGCCACCCGCATGTCTTTCCGACCGGGGAC CTGTATGCGCCGCTGGAGACGCCCAGCCTGAGCGATGCGCAGGTCAAGTCACGCTGGGAAGAAATCAAGGCGCAGGAGCGGGCGCAAAAAAGCCGACCAG
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| Amino Acid Sequence |
>(p)ppGpp synthetase
MVQVRVHQPVNTDGSINLEAWLDHVVSVDSALDRAALKEACEFAQEVEKKGNPAKHSWADGTSSYQAGLEIAEILADLKLDQDSLVAAVIYRAVREGKVT LAEVSQRFGPVVSKLIDGVLRMAAISASLSPRQSLVLGSQAQVENLRKMLVAMVDDVRVALIKLAERTCAIRAVKSADDEKRLRVAREVFDIYAPLAHRL GIGHIKWELEDLSFRYLEPEQYKQIAKLLHERRLDRERFISDVMNQLQNELLATGVKADISGRAKHIYSIWRKMQRKGLEFSQIYDVRAVRVLVPEIRDC YTALGIVHTLWRHIPKEFDDYIANPKENGYRSLHTAVIGPEGKVLEVQIRTHGMHEEAELGVCAHWRYKGTDVKPSSNHYEEKISWLRQVLEWHEELGDI GGLAEQLRVDIEPDRVYVFTPDGHAIDLPKGATPLDFAYRVHTEIGHNCRGAKINGRIVPLNYSLQTGEQVEIITSKHGNPSRDWLNSNLGYVTTSRARA KIVHWFKLQARDQNVAAGKTLLERELSRLGLPQVDFERLAEKTNVKTAEDMFASLGAGDLRLAHLVNAAQQLLEPERIEQIELVPRKPSGPRGGKRGDIQ IQGVGNLLTQMAGCCQPLPGDAIVGYITQGRGVSIHRQDCASVLQLAGKEPERMIQVSWGPIPVQTYPVDIVIRAYDRPGLLRDVSQVLLNEKINVLAVN TRSNKEDNTALMSLTIEIPGLDALGRLLGRISQLPNIIETRRNRTP
BLASTP |
DIAMOND BLASTP (DIAMOND is faster than BLASTP)
Search for conserved domains in this protein at NCBI CDD site
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