Pseudomonas parafulva YAB-1, XB13_RS05180
Cytoplasmic
Cytoplasmic Membrane
Periplasmic
Outer Membrane
Extracellular
Unknown
Sequence Data
| Strain | Pseudomonas parafulva strain YAB-1 contig4, whole genome shotgun sequence. [Details] | |
| DNA Sequence Upstream of Gene |
ATCAAGCTGGCGGTCTTCGACGTCGATGGTGTACTCACCGACGGGCGTCTCTATTTTCTTGAAGACGGCAGCGAGTTCAAGACCTTCAATACCCTCGACG GGCACGGCATCAAGATGCTGATGGCGTCTGGCGTTACGACCGCGATCATCAGCGGGCGCAAGACACCGGTCGTCGAGCGCAGGGCGAAGAACCTCGGTAT CGCGCATCTGTATCAGGGGCGCGAAGACAAACTCGTGGTGCTTGACGGCCTGCTCGCCGAGCTGGGCCTGAGCTATGATCAGGTGGCTTACCTTGGCGAT GACCTGCCGGACTTGCCGGTCATTCGGCGCGTAGCTCTGGGCATGGCCGTCGCCAACGCGGCGCCGTTCGTGCGCGAGCACGCTCACGGCGTGACCCAGG CCCGCGGCGGCGAAGGCGCCGCACGTGAATTCTGCGAACTCATCATGCAGGCCCAGGGCACCCTGGATGCTGCCAACGCCAACTACCTGTAAGGTTGCCC
|
|
| DNA Sequence for Gene |
>XB13_RS05180
ATGTTCAGCAAGAAAGCCAGAAACATCGTGCTGCTCGGGGCCATTGCGGCCCTGCTGGTGGCCGTCGGCTACTGGAACGTCAGCCCGGAGAGCTTCCTGG AGAAGCCAGTCGCCCAGGTCGACGAGAGCGCCATCGACTACTACGCCATCAACGCCCACAGCGTCCAGTTCCTGCCCGACGGCAGGCTCCAGTACGAAAT GACCGCCGACAAAGTCGAACATCTCAAGGCCAGCGAGGTCACGATGTTGACCACGCCGGACTTGCACCTGTACCGCGGCACGGCGTTTCCGTGGCATGTA CAAAGCACCCGCGCCGAGGTCAACCCCGACGGCAGCGAGGTCGAGTTGATCGACAATGTGCGGGTTGCCCGCACTGACGAACAGAAGCGTGAGACCATCA TCACCAGCTCGCGCATGACCGTGTTCCCGCAGAAGCAATATGCGCAGACCGAGCAAGCCGTTAGAATCGACGGCGCCGGTGGAACGACCACGGGCAAAGG AATGAAAGCGTACCTGAAAGAAGGCAGGATGGACCTGCTCTCTAACGTAAGAGGACAGTATGAGGCTCGTTAA
BLASTN Search
|
DIAMOND BLASTX Search (DIAMOND is faster than BLASTX)
|
|
| DNA Sequence Downstream of Gene |
AACCCTCCCCCTTTTGCTCAGCCTGAGCGCAGCACTGGGAAGCGCGAGCGCCCTCGCCCTGCCGAACGACCGTGACCAGCCGATTCGCATCCAGGCCGAC AATGCGCACCTGGACGACAAGAAAGGCGTGGCCACCTATACCGGTGACGTGATCATCACCCAGGGCTCTATGATGATCAAAGGCAACACCGTAACCATCA CTCGCACGAACGGTGGCGACATCGACGTGGTGACCTCGGTGGGCAACCTGGCCTATTTCGAGCAGCAACAAAGCGCGTCCAAGGCGGACAAGATGAAAGG CTGGGGCGTTACCATCCAGTACCAGGCCCAGAAAGACCTGGTGGTGCTCACCGACCGAGCCAAGGTGGAAAACGAAGGCAACACCACCGAAGGCGAGAAA ATCGTCTACAACACCCAGACACAAGTGGCCACTGCCGGTCGGGGTGGCAACGTAACCACGCCACGTCAGCGTATCGACATGGTGATCCAGCCCAAGAAGA
|
|
| Amino Acid Sequence |
>LPS ABC transporter permease
MFSKKARNIVLLGAIAALLVAVGYWNVSPESFLEKPVAQVDESAIDYYAINAHSVQFLPDGRLQYEMTADKVEHLKASEVTMLTTPDLHLYRGTAFPWHV QSTRAEVNPDGSEVELIDNVRVARTDEQKRETIITSSRMTVFPQKQYAQTEQAVRIDGAGGTTTGKGMKAYLKEGRMDLLSNVRGQYEAR
BLASTP |
DIAMOND BLASTP (DIAMOND is faster than BLASTP)
Search for conserved domains in this protein at NCBI CDD site
|