Pseudomonas parafulva YAB-1, XB13_RS03535

Cytoplasmic
Cytoplasmic Membrane
Periplasmic
Outer Membrane
Extracellular
Unknown

Gene Ontology

Ontology Accession Term GO Evidence Evidence Ontology (ECO) Code Reference Comments
Biological Process GO:0000160 phosphorelay signal transduction system
ISM
Inferred from Sequence Model
Term mapped from: InterPro:PF00072
 ECO:0000259
match to InterPro signature evidence used in automatic assertion

Functional Classifications Manually Assigned by PseudoCAP

Functional Predictions from Interpro

Analysis Accession Description Interpro Accession Interpro Description Amino Acid Start Amino Acid Stop E-value
Gene3D G3DSA:3.30.70.270 - IPR043128 Reverse transcriptase/Diguanylate cyclase domain 293 451 1.5E-49
NCBIfam TIGR00254 JCVI: diguanylate cyclase (GGDEF) domain IPR000160 GGDEF domain 287 448 4.5E-44
Pfam PF00990 Diguanylate cyclase, GGDEF domain IPR000160 GGDEF domain 292 445 3.1E-40
Pfam PF00072 Response regulator receiver domain IPR001789 Signal transduction response regulator, receiver domain 165 276 9.2E-21
FunFam G3DSA:3.40.50.2300:FF:000346 Diguanylate cyclase response regulator - - 160 288 1.8E-53
Gene3D G3DSA:3.40.50.2300 - - - 28 156 1.2E-9
SMART SM00448 REC_2 IPR001789 Signal transduction response regulator, receiver domain 39 151 0.031
SUPERFAMILY SSF52172 CheY-like IPR011006 CheY-like superfamily 45 155 2.42E-9
FunFam G3DSA:3.30.70.270:FF:000001 Diguanylate cyclase domain protein - - 284 450 1.5E-47
PANTHER PTHR45138 REGULATORY COMPONENTS OF SENSORY TRANSDUCTION SYSTEM - - 112 449 8.0E-86
SMART SM00448 REC_2 IPR001789 Signal transduction response regulator, receiver domain 163 276 1.2E-25
SMART SM00267 duf1_3 IPR000160 GGDEF domain 279 450 6.4E-52
SUPERFAMILY SSF55073 Nucleotide cyclase IPR029787 Nucleotide cyclase 295 450 3.69E-47
Gene3D G3DSA:3.40.50.2300 - - - 157 292 5.7E-27
SUPERFAMILY SSF52172 CheY-like IPR011006 CheY-like superfamily 156 291 2.28E-30
CDD cd00156 REC - - 166 266 6.45823E-23
MobiDBLite mobidb-lite consensus disorder prediction - - 1 25 -
CDD cd01949 GGDEF IPR000160 GGDEF domain 292 448 7.16728E-59

Search for additional functional domains at the NCBI CDD database website. Go to this protein's amino acid sequence and follow the link.