Pseudomonas parafulva YAB-1, XB13_RS20535
Cytoplasmic
Cytoplasmic Membrane
Periplasmic
Outer Membrane
Extracellular
Unknown
Sequence Data
| Strain | Pseudomonas parafulva strain YAB-1 contig14, whole genome shotgun sequence. [Details] | |
| DNA Sequence Upstream of Gene |
GAATAAGGAAAGCGCCGTGCGTCTGCGCCTGATCGCGGTTGGCTCGCGCATGCCGAAGTGGGTCGAGGAGGGCTGGCATGAGTATGTCAAGCGCCTGCCG GCCGAACTTTCGCTCGAGCTGGTGGAAATACCGCTGAACACCCGCGGCAAGAATGCCGACGTCGCCCGCCTGATTCGCCAGGAGGGCGAAGCCATGCTCA GCAAGGTGCAACCCGGGGAGCGCGTCGTAACCCTGGAGGTCCATGGCAAGCCGTGGAGCACCGAGCAACTGGCAGGTGAACTGGACCGCTGGCGCCTGGA TGCGCGCACGGTGAATCTGATGGTGGGTGGGCCCGAAGGGCTTGCGCCGCAAGTGTGCGCCCGCGCCGATCAGCGCTGGTCCCTGTCGCCGCTGACCTTG CCGCACCCGCTGGTCAGGATACTCATCGGCGAGCAGGTCTACCGGGCCTGGACGGTGTTGTCCGGGCATCCCTACCACAAATGAGCCTGTAAGCAGCCCG
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| DNA Sequence for Gene |
>XB13_RS20535
ATGTCGCAGCCGATCCGCCTCAAGGACCACGAAAAAGACGCCCGTCTGGTGCGCAACCGCGTCGTGGTCGGCGCCGTGGCGGTCATGCTGCTCATCTGCG TGCTGATTGCGCGGCTGTATTACCTGCAGATCATCCAGTACGACTACCACTCCACGCTGTCTGAGAACAACCGGGTGCATGTGCAGCCGATCCCGCCGAC ACGCGGGCTGATCTTCGACCGCAACGGGGTAGTGATCGCCGACAACCGGCCCAGCTTCAGCCTGTCCATGACCCGTGAGCGTGCGGGAGACTGGCAGCAA GTGCTGGACAGCATCGTCGAGATACTGGAACTCACTCCAGACGACCGCGCACTGTTCGAAAAGCGCATGCGCCAGGGACGCAGGCCGTTCGAGCCGGTAC CCATCCTGTTCGAACTCAACGAGGAACAGATCGCCCGTGTGGCGGTGAACCAGTTCCGCTTGCCAGGGGTGGAGGTGGTCGCCCAACTGGTGCGTCACTA TCCACAAGGGGCGCATTTCGCGCATTCGGTGGGCTACGTCGGGCGTATCAACGAGAAAGAGCTCAAAACCCTGGACCCTGTGAACTACAGCGGCACGCAC CACATCGGCAAGACTGGTATCGAGCGGTTCTACGAGGCCACACTACACGGCCAGGTCGGCTACGAAGAAGTCGAGACCAACGCCCGCGGCCGTGTGCTCA GGGTGCTCAAGCGTACCGACCCCAAGCCTGGCAAGGACATCGTGCTGAGCCTGGACATCAGGTTGCAGGAAGCGGCCGAAGCCGCCCTGGCCGGGCGCCG TGGTGCGGTGGTGGCGCTCGACCCACGTACCGGCGAAGTGCTCGCCATGGTGAGCCAGCCCAGCTTCGACCCCAACCTGTTCGTCACCGGCATCAGCTTC AAGGCCTATGCCGAACTGCGTGATTCGATCGACAGGCCGCTGTTCAACCGCATCTTGCGCGGCCTTTATCCGCCCGGTTCGACGATCAAGCCAGCCGTGG CCATCGCCGGCCTGGACAGCGGCGCGGTGACCCCGAGCAGCCGTGTGTTCGACCCTGGGTACTACCAGCTGCCCAACTACGATCACAAATACCGTAACTG GAACCGCTCGGGTGACGGCTGGGTGGACCTGGACACCGCCATCATGCGCTCCAACGACACCTACTTCTACGACCTGGCCCACAAGATGGGCATCGACCGG TTGTCCAGCTACATGAACAAGTTCGGCATCGGTCAGCGGGTGTCGCTGGACATGTTCGAAGAGTCCGCAGGGTTGATGCCGTCGCGGGAGTGGAAGCGGG CTACGCGCCGGCAGGCCTGGTTCCCGGGCGAAACCCTGATCCTGGGTATCGGCCAGGGCTATATGCAGGCCACGCCTCTGCAACTGGCCCAGGCGACGGC GCTGATTGCCAACAAGGGTGTATGGAACCGGCCGCACCTGGCCAAGACCATCGAAGGGGAACCGCCGGTGGATGAAAACCCGATGCCGGACATCGTGCTG CGCGACAAGGCCGATTGGGCGCGTGTGACCCACGGCATGGAGCAGGTGATGCACGGCGCGCGCGGTACCGCCCGCAAGGCTGCCATCGGTGCCCAGTACC GCATCGCCGGCAAAAGTGGTACCGCACAGGTGGTGGCCATCAAGCAGGGCGAGAAGTACGACCGCAACAAACTTCAGGAACGTCACCGCGACCACGCCTT GTTCGTGGCCTTCGCACCGGCAGAAGACCCCAAGATCGTGGTGTCGGTCATGGTCGAGAACGGCGAGTCGGGCTCTGGGGTGGCTGCGCCTGTGGTGCGC CAGATCATGGATGCCTGGCTGCTGGACGAAAACGGCCGGCTCAAGCCTGAGCTTGCGCCGGTTACCGCTACTCAGGAGTCGCCGCTGTGA
BLASTN Search
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DIAMOND BLASTX Search (DIAMOND is faster than BLASTX)
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| DNA Sequence Downstream of Gene |
TGAACAATTTCGATCGCATGCTCTCCAGCGAGGATGTGATGCGTCGGCGCGCCAGCTTCCTGCAGCGCATCCACGTCGATGGTCCCCTGCTGATCATCCT TCTGACCCTGGCCGCGGGCAGCCTGTTCGTGCTGTATTCGGCCAGCGGCAAGAACTGGGACCTGTTGCTCAAGCAGGCCACCTCGTTTGGCATCGGCCTG GTATCGATGTTCGTCATCGCCCAGCTCGAGCCACGGTTCATGGCGCGCTGGGTGCCACTGGCGTACCTGACCGGGGTATTGCTGCTGGTGGTGGTGGACG TCATGGGCCACAACGCCATGGGTGCAACGCGCTGGATCAACATACCCGGGGTGATTCGCTTCCAGCCCTCCGAGTTCATGAAGATCATCATGCCGGCGAC CATCGCCTGGTACTTGTCCAAGCGCACCCTGCCGCCGCACCTCAAGCACGTGGCCATCAGCCTGGTACTGATTGGCGTGCCTTTCATTCTGATCGTGCGC
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| Amino Acid Sequence |
>penicillin-binding protein 2
MSQPIRLKDHEKDARLVRNRVVVGAVAVMLLICVLIARLYYLQIIQYDYHSTLSENNRVHVQPIPPTRGLIFDRNGVVIADNRPSFSLSMTRERAGDWQQ VLDSIVEILELTPDDRALFEKRMRQGRRPFEPVPILFELNEEQIARVAVNQFRLPGVEVVAQLVRHYPQGAHFAHSVGYVGRINEKELKTLDPVNYSGTH HIGKTGIERFYEATLHGQVGYEEVETNARGRVLRVLKRTDPKPGKDIVLSLDIRLQEAAEAALAGRRGAVVALDPRTGEVLAMVSQPSFDPNLFVTGISF KAYAELRDSIDRPLFNRILRGLYPPGSTIKPAVAIAGLDSGAVTPSSRVFDPGYYQLPNYDHKYRNWNRSGDGWVDLDTAIMRSNDTYFYDLAHKMGIDR LSSYMNKFGIGQRVSLDMFEESAGLMPSREWKRATRRQAWFPGETLILGIGQGYMQATPLQLAQATALIANKGVWNRPHLAKTIEGEPPVDENPMPDIVL RDKADWARVTHGMEQVMHGARGTARKAAIGAQYRIAGKSGTAQVVAIKQGEKYDRNKLQERHRDHALFVAFAPAEDPKIVVSVMVENGESGSGVAAPVVR QIMDAWLLDENGRLKPELAPVTATQESPL
BLASTP |
DIAMOND BLASTP (DIAMOND is faster than BLASTP)
Search for conserved domains in this protein at NCBI CDD site
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