Pseudomonas parafulva YAB-1, XB13_RS18260 (sbcB)
Cytoplasmic
Cytoplasmic Membrane
Periplasmic
Outer Membrane
Extracellular
Unknown
Sequence Data
| Strain | Pseudomonas parafulva strain YAB-1 contig13, whole genome shotgun sequence. [Details] | |
| DNA Sequence Upstream of Gene |
CGACCGCCACCAGTTGCCCTTTGTCCTGAAGGTATTCAATCGCTTCAATGGGCAGGAGATGGGCCAGCTGGGCAATGCCTCTGAAAACGGCATGATGCTG ATCAGCGAGCTGCCGGTCATGGTGGGCCCCGATTACGAATTGCAGTTGCGCCTGCCGTTGACGGGGGGTGGGCATCAGTTCGTCAACCTTACGGCCAGTT GTCTGTGGTGCCGCGAGGACCAGACGCCTGGGTACTACGATTCGGGCTTCATGTTGTTGCAGGCGCCTCGCGAATACGACGACTTTGTGCGCTCCTTGCA GGAGTACTTCAGTTTTCGCGCCTCCTCTACCTCGGTTTGACAGGTCGGTATTGCCGATTGCTGACGCCCGTCCATGAGATCGGTCCGGGTCAGTAGGGGC TGTGTAGCACGGCCTACTGGCCCCAAGTCGCTTCATTGGCCCGACGTCAGGCCCGGCTCAACGCGTTAGAATCAGGGCGAACCTGCAACAGGACGGCCCT
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| DNA Sequence for Gene |
>XB13_RS18260
|sbcB
GTGACTTCAAGCATTTTCTGGCATGACTACGAAACCACCGGCATCAACCCGCGCTGCGACCGGCCCGTGCAGATGGCAGGGGTGCGTACCGACCTCGACC TGAATGAAATCGCCGAACCGATCAACCTCTATTGCCGCTTGTCGGATGACATATTGCCGCATCCTGCTGCCTGCCTGGTGACGGGCGTCACGCCGCAACA GTTGGCCGAAAAAGGACTCGGCGAGGCCGAGTTCATGGCGCGCGTGCATGCCGAACTGGCGCAACCCGGTACCTGCGGTGCCGGCTACAACACGCTGCGT TTCGACGACGAAGTCACGCGCTACAGCCTATACCGCAACTTCTTCGACCCTTACGCACGCGAGTGGCAGGGCGGTAACAGTCGCTGGGACCTGATCGATA TCGTCAGGACCGCGTTCGCGTTGCGTCCCGATGGCATTCAATGGCCCCAGCAGGAAGGGCGCATCAGTCTGCGCCTTGAGTTGTTGAGCAAGGCCAACGG CCTCGAACATGGCCACGCACACGAGGCACTCTCCGATGTTCGGGCGACCATTGCCCTTGCCCGGCTGATACGCGAGAAGCAGCCAAAGTTGTACGACTGG TTGTTTCAGCTTCGCAGCAAGCACAAGGTCATGGAGCAGATACGGCTGCTGCAGCCGATGGTGCATATTTCTGGACGTTTCAGTGCTGCGCGTCATTACT TGGGCGTCGTGTTGCCTTTGGCCTGGCACCCTAAAAACCGCAATGCATTGATTGTTTGCGATCTGCATCAGCAAACCCTGCCGCTGATTGAAGAGCGCGC CGAAACTTTGCGCCAGCGGCTCTATACCCGTCGAGAAGCCCTTGGCGAAGGCGAGCTCCCTGTACCGCTCAAACTCATCCAGATCAACCGCTGCCCGGTG GTGGCGCCCCTTTCTGTATTACGACCGGCTGATCAAGCGCGTCTGGGGATTGACCTGGACGCATTACAACGACGCGCCGAGGCATTGGTCCGTCAACAGG ATCAATGGCAGGAAAAACTGGCACCTATTTATACGCAAGACGGTTTTGCGGCCAGTGACGATCCTGAACAGCAATTGTATGAGCGGTTTCTCGGCGAGCG TGACCGGCGGTTATGCGATCAAGTGCGTTCGCTGGCGCCCGCCCAGTTGGGCGCCGGGCAGTGGATGTTCGATGATCCACGCTTGGCCGAATTGCTCTTT CGCTACCGTGCACGTAACTTTCCCGACACCTTGAACGATGAAGACAGGGCGCGATGGCAGGATTTTTGTAGGCAACGTCTGACTGACCCCCGCTGGGGTG CGCCCAATACCCTGGGTGATTTCGCCCAGGCCCTGGCCGCAGCCTGGCCTGGCGCGGGTGAAGCAGGACAGCAAGTGCTGACAGCCTGGCAACTGCATGC CAACGCGTTGCAAACGCGGTTTGCCGTCAATTGA
BLASTN Search
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DIAMOND BLASTX Search (DIAMOND is faster than BLASTX)
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| DNA Sequence Downstream of Gene |
AAGCCCATAAAAAAACGCCGGTTATTAACCGGCGTTTTTTACGTATATCAAATAGCGAGCAATGGACAATCAGTCCAGCAGGGTTGCCCAGCTTTCTACC TCGTCACCGCCCCATTGAGCTTTCCACTCTTTCAGGGTTTTGTGGTTACCACCTTTGGTTTCGATGACTTCACCGTTGTGCGGGTTTTTGTATTGCTTGA CCTTGCGCGCGCGTTTGGTGCCAGTGGTTTTCACGGCGCCACGCGGCAGTTTGCTCATCTTGGCATCAGGGTCGAGCAGGGCAATGATGTCACGCAGCGA CTTGGAATATTCGCCCATCAGGGTGCGCAGTTTGCCTTCGAACTCCAGTTCTTTTTTCAGCTTGTCATCCTGAGACAGGTTGGCCAGGCGGGCCTGAAGT TCCTTGATGGCTTCTTCGGTAGCACGGTACTCGTTGATCAGGGACATGGAGTGTTCCTTAATGCGTGTTCGGAAATGTGTGGAGCAATAGTAAACAGGCA
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| Amino Acid Sequence |
>exonuclease I
MTSSIFWHDYETTGINPRCDRPVQMAGVRTDLDLNEIAEPINLYCRLSDDILPHPAACLVTGVTPQQLAEKGLGEAEFMARVHAELAQPGTCGAGYNTLR FDDEVTRYSLYRNFFDPYAREWQGGNSRWDLIDIVRTAFALRPDGIQWPQQEGRISLRLELLSKANGLEHGHAHEALSDVRATIALARLIREKQPKLYDW LFQLRSKHKVMEQIRLLQPMVHISGRFSAARHYLGVVLPLAWHPKNRNALIVCDLHQQTLPLIEERAETLRQRLYTRREALGEGELPVPLKLIQINRCPV VAPLSVLRPADQARLGIDLDALQRRAEALVRQQDQWQEKLAPIYTQDGFAASDDPEQQLYERFLGERDRRLCDQVRSLAPAQLGAGQWMFDDPRLAELLF RYRARNFPDTLNDEDRARWQDFCRQRLTDPRWGAPNTLGDFAQALAAAWPGAGEAGQQVLTAWQLHANALQTRFAVN
BLASTP |
DIAMOND BLASTP (DIAMOND is faster than BLASTP)
Search for conserved domains in this protein at NCBI CDD site
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