Pseudomonas parafulva YAB-1, XB13_RS18190
Cytoplasmic
Cytoplasmic Membrane
Periplasmic
Outer Membrane
Extracellular
Unknown
Sequence Data
| Strain | Pseudomonas parafulva strain YAB-1 contig13, whole genome shotgun sequence. [Details] | |
| DNA Sequence Upstream of Gene |
CTGTGCCTGGCAGCGCTGTACGAAAGCTGGTCGATTCCGATCGCCGTGGTGCTGGTGGTGCCACTGGGCATCATCGGTGCGTTGATCGCTACCAGCCTGC GCGGGCTGTCCAATGACGTGTACTTCCTGGTCGGCCTCTTGACTACCATCGGCCTGGCGGCCAAGAACGCCATTCTGATCGTCGAGTTCGCCAAGGAATT GCACGAGCAGGGCCGCAGCCTGTACGACGCGGCGATCGAGGCGTGCCGCATGCGTTTGCGCCCGATCATCATGACCTCGCTGGCCTTCATCCTCGGCGTG GTACCGTTGACCATCGCCAGCGGCGCTGGCGCCGGCAGCCAGCACGCCATTGGTACCGGCGTGATCGGCGGCATGATCAGTGCGACCGTGCTGGCCATCT TCTGGGTACCGTTGTTCTTCGTCGCAGTGTCGTCGCTGTTCGGCAGCAAAGAGCCGAAAAAAGATGACACCCCTGAAACTCCACGTTATGAGGCTGGGCA
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| DNA Sequence for Gene |
>XB13_RS18190
ATGACCAAGTCTTTGTTGTCCCTGGCAGTCACCGCTTTCATCCTCGGCGGCTGCTCGCTGATCCCCGACTACCAGACCCCGGAAGCACCGGTGGCTGAGC AGTGGCCGCAAGGTCCGGCCTACTCGCCCACCCAGTCGGCGGACGTCGCTGCCGCCGAACAGGGCTGGCGGCAGTTCTTCAACGACCCGGCGCTGCAGCA ACTGATCCAGACCGCGCTGGTCAACAACCGGGACCTGCGCGTCGCGGCGCTGAACATCGACGCCTACCGCGCCCAGTACCGCATCCAGCGTGCGGACCTG TTCCCGGCGGTGTCGGCCAACGGCAGTGGCAGCCGTCAACGCATCCCGGCGAACATGTCGCAGACTGGCCAGTCGGGCATCACCAGCCAGTATTCGGCAA CCCTGGGCGTCAGTGCCTATGAACTCGACCTGTTCGGCCGCGTGCGCAGCCTTTCGGAACAGGCGCTGGAGACCTACCTGTCCAGCGAGCAGGCGCGTCG CTCCACCCAGATCAGCCTGGTGGCGAGCGTGGCGAACGCCTATTACACCTGGCAGGCCGACCAGGCGCTGTTCAAGCTGACCGAGGAAACCCTGAAGAAC TACCAGGAAAGCTACAACCTCACCCGGCGCAGCAACGAGGTGGGCGTGGCGTCGGCGCTGGACCTGAGCCAGGCCCGCACGGCTGTCGAAGGCGCCCGGG TCAAGTACTCGCAGTACCAGCGCCTGGTCGCCCAGGACGTGAACAGCCTGACTGTCCTGCTGGGGACCGGCATCCCCACAAACCTGCCTGAACCACTGCG CCTGGACGCCGATCAACTGGCCGAAGTACCGGCAGGCCTGCCGTCGGACCTGTTGCAGCGCCGCCCTGACATCCAGGAGGCCGAGCACCTGCTCAAGGCG GCCAACGCCAACATCGGCGCTGCCCGCGCGGCCTTCTTCCCCAGCATCAGCCTGACGGCCAATGCGGGCACCTTGAGCACCGACATGGGCGGGCTGTTCA AGGGTGGGTCGGGCACCTGGCTGTTCCAGCCGCAGATCAACCTGCCGATCTTCACCGCCGGCAGCCTGAAAGCGAGCCTTGACTACGCCAAGATCCAGAA GGACATCAACGTCGCCCGCTACGAGAAGTCCATCCAGACTGCGTTCCAGGAAGTATCCGATGGGCTGGCTGCGCGCAAGACCTTCGAGGAGCAGTTGCAA GCCCAGCGGGACCTGGTGCAAGCCAACCAGGACTACTACCGCCTGGCCGAGCGTCGGTACCGTATCGGCATCGACAGCAACCTGACGTTCCTCGACGCCC AGCGCAACCTGTTCAGTGCGCAGCAGGCGCTGATCGGTGACCGCCTTTCGCAGCTGACCAGCGAAGTCAACCTGTACAAGGCACTCGGTGGCGGCTGGTA CGAGCGCACCGGGCAGGCCAACCAGCAGGCCTCGGTACAGACGCCCCGCGGCTGA
BLASTN Search
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DIAMOND BLASTX Search (DIAMOND is faster than BLASTX)
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| DNA Sequence Downstream of Gene |
TACCCGCCCGCTTGCTCACCACCCGCCAGGCCTCGACAGACGCGGTGGGTGATGAGCAAGGCGCGGCCCTGGCATTCGCCAGGCTGATGATGATGGTGAC CACAGCTATCCTGAGCTATATCGGGCACACCCCGGCAAGCCCACCAGGAGGCAGCACCATGAGCACCCTCGCCGAGCACCTGATCCGCTACGCGGGCTAT CACCGCGACCCACGCAACATCGTCACTCATTTCGTCGGCATACCTCTGATTGTCCTGTCCGTGACCATTCTGTTGTCTCGGCCAGGCGGGTCGCTGGGCG GCATTTGGCTGTCTCCTGCCCTGCTTGTCTCGGCGGCGGCCACCTGGTTCTACCTGCGCCTGGAGCTTCGCTTCGGCCTGGTGATGGGCGCCCTGTTGGG CCTGTGCCTGTGGTTAGGTCACCTGCTGGCGGTGCAGACCACGGCGCTGTGGCTGTCGGTGGGCGTGGGTGCATTCGTGGTGGGCTGGATCATCCAGTTC
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| Amino Acid Sequence |
>adeC/adeK/oprM family multidrug efflux complex outer membrane factor
MTKSLLSLAVTAFILGGCSLIPDYQTPEAPVAEQWPQGPAYSPTQSADVAAAEQGWRQFFNDPALQQLIQTALVNNRDLRVAALNIDAYRAQYRIQRADL FPAVSANGSGSRQRIPANMSQTGQSGITSQYSATLGVSAYELDLFGRVRSLSEQALETYLSSEQARRSTQISLVASVANAYYTWQADQALFKLTEETLKN YQESYNLTRRSNEVGVASALDLSQARTAVEGARVKYSQYQRLVAQDVNSLTVLLGTGIPTNLPEPLRLDADQLAEVPAGLPSDLLQRRPDIQEAEHLLKA ANANIGAARAAFFPSISLTANAGTLSTDMGGLFKGGSGTWLFQPQINLPIFTAGSLKASLDYAKIQKDINVARYEKSIQTAFQEVSDGLAARKTFEEQLQ AQRDLVQANQDYYRLAERRYRIGIDSNLTFLDAQRNLFSAQQALIGDRLSQLTSEVNLYKALGGGWYERTGQANQQASVQTPRG
BLASTP |
DIAMOND BLASTP (DIAMOND is faster than BLASTP)
Search for conserved domains in this protein at NCBI CDD site
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