Pseudomonas parafulva YAB-1, XB13_RS17830
Cytoplasmic
Cytoplasmic Membrane
Periplasmic
Outer Membrane
Extracellular
Unknown
Sequence Data
| Strain | Pseudomonas parafulva strain YAB-1 contig13, whole genome shotgun sequence. [Details] | |
| DNA Sequence Upstream of Gene |
TGAAGCCTTCAACATGCTCGAGAGCGGTCGCGCTGTGGCCTTCATGATGGACGACGCGCTGCTCGCTGGCGAAATGGCCAAGGCTCGCAAGCCGTCGGAC TGGGTCATCACCGGTACGCCGCAATCCTACGAAATCTACGGTTGCATGGTGCGCAAGGGTGATGAGCCCTTCAAGAAGGCCGTGGATGACGCGATCATTG GCTACTTCAAGTCCGGTGAAGTCAACAAGAGCTACGACAAGTGGTTCCAGCAGCCAATCCCGCCTAAAGGCCTGAACCTGCAGTTCCCAATGAGCGACGA GCTCAAGAAGCTGATCGCCGAGCCGACCGACAAGGCGGCGGACGAGAAGAAATCCTGACCCCCAGCCTGGAGCCTGCCGCGCTGCAAGGCGCGAATTAAA CGGGCAGGCTCCCCGTTAGTGTCTAACCTTTCATCCGAGGGCAGTTTGCCCTCGGATGCTGGAAGGTGCCTGTGAAACAATCGTCTGAGGGGAAATCCCG
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| DNA Sequence for Gene |
>XB13_RS17830
ATGAATTACAACTGGGACTGGGGCGTATTCTTCAAGTCCACTGGCGTGGGCAGCGAAACCTATCTGGACTGGTACATCACCGGCCTGGGGTGGACCATCG CCATCGCCATTTCCGCCTGGATCATCGCCTTGCTGCTGGGGTCGATCCTGGGCGTGATGCGAACCGTGCCTAACCGGCTCGTTTCCGGTATCGCAACCGC ATACGTCGAGCTGTTCCGCAACGTGCCTTTGCTGGTGCAGCTGTTCATCTGGTACTTCCTGGTGCCGGACCTGCTGCCAGAGGGGCTGCAGGAATGGTTC AAGCAGGACTTGAACCCGACCACGTCGGCCTTGATCAGTGTGGTCGTGTGCCTGGGCCTGTTCACCGCCGCGCGCGTGTGTGAACAGGTTCGCACCGGCA TCCAGGCCCTGCCGCGTGGCCAGGAAGCCGCCGCGCGAGCGATGGGTTTCAGCCTGCCGCAGATCTACACCAACGTGCTGCTGCCACAGGCCTACCGCAT CATCATTCCGCCACTTACCTCCGAATTCCTGAACGTGTTCAAGAACTCCTCGGTGGCTTCGTTGATCGGCCTGATGGAGCTGCTGGCGCAAACCAAGCAG ACTGCCGAGTTCTCGGCGAACCTGTTCGAAGCGTTCACCTTGGCCACGTTGATCTATTTCACCCTCAACATGGGCCTGATGCTGCTCATGCGTATCGTCG AGAAGAAAGTGGCCGTACCTGGCCTGATCTCTGTGGGGGGCAAGTAA
BLASTN Search
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DIAMOND BLASTX Search (DIAMOND is faster than BLASTX)
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| DNA Sequence Downstream of Gene |
ATGGACCTGGATTTCAGCGAAATCATCCCCGCCCTGCCCGCCCTCTGGGATGGCATGGCCATGACCCTGCAATTGATGGTGATGGGCGTCATCGGCGGCA TCGTGCTGGGCACCCTGCTGGCGCTGATGCGCCTGTCGTCGAATAAACTGCTGTCCAGGCTGGCCGGCGCCTACGTCAACTATTTTCGTTCGATCCCGCT GCTGCTGGTGATCACCTGGTTCTACCTGGCTGTGCCGTTCGTGCTGCGCTGGATCACTGGGCAGGATACGCCGGTGGGGGCCTTCACCTCCTGCGTGGTC GCCTTCATGATGTTCGAGGCGGCCTACTTCTGCGAAATCGTGCGTGCCGGTGTGCAGTCGATCTCCAAAGGCCAGATGGGCGCAGCCCAGGCGTTGGGCA TGACCTATGGCCAGACCATGCGCCTGATCATCCTGCCCCAGGCCTTCCGCAAGATGACGCCGTTGCTGCTGCAGCAGAGCATCATCCTGTTCCAGGACAC
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| Amino Acid Sequence |
>amino ABC transporter permease, 3-TM region, His/Glu/Gln/Arg/opine family domain protein
MNYNWDWGVFFKSTGVGSETYLDWYITGLGWTIAIAISAWIIALLLGSILGVMRTVPNRLVSGIATAYVELFRNVPLLVQLFIWYFLVPDLLPEGLQEWF KQDLNPTTSALISVVVCLGLFTAARVCEQVRTGIQALPRGQEAAARAMGFSLPQIYTNVLLPQAYRIIIPPLTSEFLNVFKNSSVASLIGLMELLAQTKQ TAEFSANLFEAFTLATLIYFTLNMGLMLLMRIVEKKVAVPGLISVGGK
BLASTP |
DIAMOND BLASTP (DIAMOND is faster than BLASTP)
Search for conserved domains in this protein at NCBI CDD site
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