Pseudomonas parafulva YAB-1, XB13_RS16930
Cytoplasmic
Cytoplasmic Membrane
Periplasmic
Outer Membrane
Extracellular
Unknown
Sequence Data
| Strain | Pseudomonas parafulva strain YAB-1 contig12, whole genome shotgun sequence. [Details] | |
| DNA Sequence Upstream of Gene |
CCATTTCATTTCCCAGAAAAACTTATTCCACTTGTAATCTTGAACGCACTTGAAGGTAAACCTTTGCCAATCTACGGTAAGGGCGACCAGATCCGCGATT GGTTATATGTAGAAGATCACGCTCGAGCTCTTTACAAGGTAGTTACAGAGGGAAAAGTTGGCGAAACCTATAATATCGGCGGCCATAATGAAAAGCAGAA CATCGAGGTTGTTCGCACAGTTTGCGCGCTGCTCGATGAACTGCGGCCTGATTCTACTTATCGCCCCCATGTTGAGCTATTGACTTACGTGCAAGACCGT CCAGGCCACGATTTGCGGTATGCGATTGACGCCAGCAAGATCCAGCGTGACCTTGGTTGGGTACCAGAAGAGACGTTTGAGTCGGGCATTCGCAAAACTG TTCTATGGTATCTGGAGAACCCTGAGTGGGTTGCGCACGTGAAAAGCGGCAGCTACCAACAGTGGATTGACAATAACTACGCTAAGCGCACCGGCCAAGC
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| DNA Sequence for Gene |
>XB13_RS16930
ATGAAAATTCTTTTGTTGGGCAAAAATGGCCAAGTAGGTTGGGAGCTACAGCGAGCTCTCAGTTTGCTCGGCGAAGTTGTGGCTCTTGATCGCACTGTGG CTCAGACGCCTTACGGTGAGCTGAGAGGCGATTTGTCAGATCTGGAGGGGCTTCGGACTGCCATTCGCTCAGTGTCCCCTCATGTGATTGTGAACGCGGC AGCTTACACGGCTGTGGATAAAGCCGAAAGCGAGCGCGATATGGCGCATATCGTTAACGCCGCAGCTAGCCAGGTAATGGCTGAGGAAGCTAAGCGTCTT GATGCGTGGTTGATTCACTATTCGACCGACTATGTTTTCGACGGTGCCGGTACCTCTGCATGGAAGGAGACCGACAAAGTCGCACCGGTCAATCATTACG GCGCGACCAAGCTCGAAGGTGAACAGCTTATACAGGCTTCGGGTTGTAAACACTTGATTTTCCGTACCAGCTGGGTCTATAGCGCCCGGGGCAATAACTT TGCCAAGACCATGTTAAGGCTGGCTAAGGATCGACCTAACCTCAATGTCATCGCTGATCAGGTCGGGGTACCCACCGGAGCAGACCTGCTTGCCGATGTG GCGGTGGCAGCTCTGCAGAAGGCTTGCCGTAACCCGGAATTAGCAGGCATTTATCATCTAGCTCCGGCAGGCGAAACCACTTGGCATGCTTACGCCAGCT ACGTAATTGAATGGGCCCGGAGTCATGGTGAGAATCTTGCGGTCCAATCCGTGAATCCGATCACTACGGCTGAATACCCTACTCCGGCGAGTCGACCATT GAATTCTCGCTTGGATACCTCCAAGCTTCGCCATGCCTTCTCCCTGCACTTGCCTGACTGGCAATGTGGTGTAACCCGTATGCTCATGGAAGCTCTCAAC AAATGA
BLASTN Search
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DIAMOND BLASTX Search (DIAMOND is faster than BLASTX)
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| DNA Sequence Downstream of Gene |
ATACAACCAATCGCAAAGGGATCATTCTGGCTGGTGGTTCCGGGACGCGTCTGCACCCAGCAACGCTATCTGTTTCAAAGCAGCTTCTGCCCGTCTATGA CAAGCCGATGATCTACTATCCCCTGGGCACATTGCTGCTGGCAGGTATTCGCGACATCCTGATCATCTCCACGCCTCAAGATACGCCGCGTTTCGAGCAG CTTCTGGGTGATGGTAGTCAGTGGGGCATAAACCTGACCTATGCCGTGCAGCCGAGCCCGGATGGACTCGCGCAAGCATTCACGATCGGTGCCGACTTCA TCGGTAACAACCCGTCTGCTCTCGTGCTAGGCGACAACATCTTCTATGGCCACGACTTCCAGTCGCTGCTGTTGAACGCTGGCAAGCGCGATACTGGTGC TTCGGTGTTCGCTTACCACGTGCATGACCCAGAACGATACGGTGTAGCCGAATTCGACGAAAAAGGACGTGTGCTTTCGCTGGAAGAAAAGCCTTCAGTT
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| Amino Acid Sequence |
>dTDP-4-dehydrorhamnose reductase
MKILLLGKNGQVGWELQRALSLLGEVVALDRTVAQTPYGELRGDLSDLEGLRTAIRSVSPHVIVNAAAYTAVDKAESERDMAHIVNAAASQVMAEEAKRL DAWLIHYSTDYVFDGAGTSAWKETDKVAPVNHYGATKLEGEQLIQASGCKHLIFRTSWVYSARGNNFAKTMLRLAKDRPNLNVIADQVGVPTGADLLADV AVAALQKACRNPELAGIYHLAPAGETTWHAYASYVIEWARSHGENLAVQSVNPITTAEYPTPASRPLNSRLDTSKLRHAFSLHLPDWQCGVTRMLMEALN K
BLASTP |
DIAMOND BLASTP (DIAMOND is faster than BLASTP)
Search for conserved domains in this protein at NCBI CDD site
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