Pseudomonas parafulva YAB-1, XB13_RS00495
Cytoplasmic
Cytoplasmic Membrane
Periplasmic
Outer Membrane
Extracellular
Unknown
Sequence Data
| Strain | Pseudomonas parafulva strain YAB-1 contig1, whole genome shotgun sequence. [Details] | |
| DNA Sequence Upstream of Gene |
TTGCTGACCGAGCCTGAAGGCATGGTCAGCATCGTTCTTGGGCAACACCATATCCGCGCAACGACGGGTGAGTTCACATTCACCTCCAAGCTCGTCGACG GTAAATTCCCTGACTACGAGCGTGTGCTGCCCAAAGGCGGTGACAAACTGGTGATTGGTGATCGCCAAGCTTTGCGCGAGGCGTTCAGCCGCACCGCGAT CCTGTCCAACGAAAAGTACCGCGGGATTCGCTTGTTGCTCGCTGCCGGCCAGTTGAAGATCCAGGCCAACAACCCCGAGCAGGAAGAGGCTGAGGAAGAA ATCAGCGTCGACTACGACGGTAGCTCGCTTGAGATCGGTTTCAACGTCAGCTACCTGCTGGATGTGCTGGGCGTCATGACCACTGAGCAGGTGCGCCTGA TTTTGTCGGACTCCAACAGCAGTGCACTGCTGCAGGAGGCAGGCAATGACGACTCTTCGTACGTTGTCATGCCGATGCGGCTGTAAGCAAAGCAGGCCAA
|
|
| DNA Sequence for Gene |
>XB13_RS00495
ATGTCACTTAGGCGTATCATCGTCACCGGGGTGCGAAACCTGCACCCGGTGACGCTCTCCCCTTCCCCGCGTATCAACGTGCTCTATGGCGATAACGGGA GCGGCAAGACAAGCCTTCTTGAAGCTGTTCATCTACTCGGTCTGGCTAGATCCTTTCGCAGCACTCGCTTGAACCCGGTAATCCAGTACGAGCAAGCCTC TTGTACGGTATTCGGGGAGGTGCTCCTTGCCGAAGGCGGTACCTGTAACCTTGGGGTGTCTCGCGAGCGGCAGGGTGATTTCACCATCAGGATCGATGGG CAGAATGCGCGTAGCGCTGCACAGCTTGCTGAATTGCTTCCATTACAGCTCATCAACCCAGACAGCTTTCGACTCCTCGAAGGCGCCCCGAAGATCAGGC GACAGTTTCTCGACTGGGGCGTGTTCCACGTGGAACCTCGCTTCATGCCCGCGTGGCAACGCCTGCAGAAGGCCCTCAGGCAGCGGAACTCATGGTTGCG GCATGGTACACTTGACCCAGCTTCGCAAGCCGCTTGGGACCGGGAGTTATGCCTGGCCAGCGCCGAAATAGATGAATACCGCCGCGAATACATCAAGGCC CTGAAGCCTGTATTCGAAAAGACTTTGAGTGAGTTGCTTGAGCTAGACGGTCTTACCCTGAGCTATTACCGAGGCTGGGACAAAGACCGGGAGCTGCAGG ATGTGTTGACTACTTCCCTCCTTCGTGACCAGCAGATGGGACACACGCAGGCGGGTCCGCAACGTGCAGATTTGCGACTTCGATTAGCTGCAAACAACGC AGCAGACATCCTGTCCCGCGGCCAGCAAAAACTGGTGGTATGCGCACTGCGGATAGCTCAAGGTCATTTGGTTGGCCAAGCACGACGCGGCCACTGCATT TATCTTGTGGACGATTTGCCGTCGGAACTCGATGAGCAACATCGCCGCGCACTATGTCGCTTGCTTGAAGAATTACGCTGCCAGGTATTCATCACCTGTG TAGATCATGAATTATTGAGGGAAGGCTGGCAGACGGAAACGCCGGTTGCTTTGTTCCACGTGGAACAAGGCTGTATCACCCAGACCCACGACCATCGGGA GTGA
BLASTN Search
|
DIAMOND BLASTX Search (DIAMOND is faster than BLASTX)
|
|
| DNA Sequence Downstream of Gene |
AGGCATGAGCGAAAATCAGACGTACGACTCCTCCAGCATCAAGGTGCTAAAAGGTTTGGATGCCGTGCGCAAGCGTCCCGGCATGTACATTGGCGACACC GATGATGGTAGCGGCCTGCACCACATGGTCTTCGAGGTGGTCGACAACTCCATCGACGAAGCCCTGGCCGGCCACTGCGACGACATCACAGTAATTATTC ACCCTGATGAATCCATCAGCGTGCGTGACAACGGCCGTGGCATTCCGGTCGACGTGCATAAAGAAGAAGGCGTTTCGGCAGCAGAAGTCATCATGACTGT GCTGCACGCAGGCGGTAAGTTCGATGACAACTCCTACAAGGTATCCGGTGGATTGCACGGGGTAGGCGTTTCGGTCGTCAACGCGTTGTCCGAGCAACTG ATACTGACGGTGCGTCGCAGCGGCAAGATCTGGGAACAGACGTACGTCCACGGTGTGCCTCAGGCGCCGATGGCCATCGTCGGTGAAAGTGAGACGACCG
|
|
| Amino Acid Sequence |
>recombinase RecF
MSLRRIIVTGVRNLHPVTLSPSPRINVLYGDNGSGKTSLLEAVHLLGLARSFRSTRLNPVIQYEQASCTVFGEVLLAEGGTCNLGVSRERQGDFTIRIDG QNARSAAQLAELLPLQLINPDSFRLLEGAPKIRRQFLDWGVFHVEPRFMPAWQRLQKALRQRNSWLRHGTLDPASQAAWDRELCLASAEIDEYRREYIKA LKPVFEKTLSELLELDGLTLSYYRGWDKDRELQDVLTTSLLRDQQMGHTQAGPQRADLRLRLAANNAADILSRGQQKLVVCALRIAQGHLVGQARRGHCI YLVDDLPSELDEQHRRALCRLLEELRCQVFITCVDHELLREGWQTETPVALFHVEQGCITQTHDHRE
BLASTP |
DIAMOND BLASTP (DIAMOND is faster than BLASTP)
Search for conserved domains in this protein at NCBI CDD site
|