Pseudomonas viridiflava LMCA8, RT94_RS04145
Cytoplasmic
Cytoplasmic Membrane
Periplasmic
Outer Membrane
Extracellular
Unknown
Sequence Data
| Strain | Pseudomonas viridiflava strain LMCA8 contig_9, whole genome shotgun sequence. [Details] | |
| DNA Sequence Upstream of Gene |
AATGTCCGTGGCCACCTGATCGTTGCGGCTGCGACCGGTGTGCAGTTTCTTGCCGGTGATGCCGATGCGGTCGGTCAGGCGCGCTTCGATGTTCATGTGC ACGTCTTCCAGGTCGACGCGCCAGTCGAAAGTCCCTGCCTCGATCTCGGTCTGAATGGTCTTCAGGCCATCGATGATCGTGTCGCGCTCGGCGTCAGTCA GAACGCCTACCTTGGCCAGCATCGTGGCGTGGGCGATAGAGCCCATGATGTCGTGGCGATACAGGCGCTGGTCGAAGGTGACGGAGGCAGTGAAGCGCGC GACGAACGCGTCGACGGGTTCACTGAAGCGGCCGCCCCAGGACTGATTGGTCTTGTCGGTGCTCATGGATTCGCTCGTTGCTCTACGGAAAGTGGCGTGC CCGATACGTGGCACAAAGGCGGTTGCGATGATAACAGGGTTGACACTTTTTTATTTCCGGATGGCTTGCCGCTGGCCCTGCCAGAGCCGAGACTGAGCCG
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| DNA Sequence for Gene |
>RT94_RS04145
ATGCGAGATCATCCTGTAAAGCGTGACACCGGGCGTGCTCCCGGCAAAGAATTCTTCCTCCCCGAACTGTGCCTGCCGCAGGCGCTGCTCGTGCTCGTGG TGCTGGCCGAACTGTTGGTACTGGTTCTGGTGCTGGTCGAGCCGATGCGCACGGGGTTCGATTGGGTGCGGCTGGCACTGATGTCGCTGTTCGTGCAATG GATCGTGCTGCTGTCCGCCGCCTTGCTGTGCGGCCTGCGACCCTGGCTGGCACGTCTCTCGCCAGGACTTGCAGGTCTGCTCGGTTGTCTGTTGGTGGTC GGTCTGACGCTGCTGTGCACGGCGGTCACCGACGTGTGTCAGCTCACCGGCAGGATCACGGTGGGCGGCATGGTGGATCGGTACATTCGCTATTCGATGA TTGCGCTGATCATGTCAGCCCTGATGTTGCGCTACTTTTATCTGCAGAGTCAGTGGCGCAAGCAGCAGCAGGGCGAGCTCCAGGCCAGGATCGAATCGTT GCAGGCGCGTATCCGGCCGCACTTTCTGTTCAATACGCTCAACAGCATCGCGAGCCTGGTGGCCAGCAATCCAGTCAAGGCCGAGCAGGCGGTGCTGGAT CTTTCCGACCTTTTTCGCGCCAGTCTGGCCAAGCCCGGCAGCCTTGTTACGTGGAGCGAGGAGCTGGCTTTGGCAAAACGATATTTATCGATTGAGCAAT ATCGTCTCGGCGAGCGTCTACAGTTGGACTGGAGGGTGAGCGCAATTCCTGATGACTTGCCGATTCCCCAGCTAACCTTGCAGCCATTACTTGAAAACGC TTTGATCTATGGCATTGCCCCGCGAGTCGAAGGGGGTGTAGTAACAGTCGAAGCAGACTATAGAGAGGGAGAGTTCATATTGCGTGTCAGCAATCCCTAT GAAGAAGTTGCCACTCGGCAGACTTCCAACGGTACTCAACAGGCCCTGACGAATATCGGTGCGCGCATTACGGCACTTTTTGGCCCGTACGCCAGTCTGA GCGTGGAGCGCCGTGACGGTCGTCACTACACCTGTCTACGCTATCCTTGTGCGAGACTCACGCAGGAAGCCAGAGCTATATGA
BLASTN Search
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DIAMOND BLASTX Search (DIAMOND is faster than BLASTX)
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| DNA Sequence Downstream of Gene |
ATGTCCTGATCGTTGATGACGAACCCCTGGCCCGCGAGCGACTGAGCCGATTGGTCGGCGAACTCGAGGGTTACCGGGTACTAGAACCCAGCGCCACAAA TGGTGATGAAGCATTGGCGCTGATCGATAATCTCAAGCCGGATGTCGTGCTGCTGGACATCCGTATGCCGGGTATGGACGGCTTGCAGGTCGCCGCCAGG CTGTGCGAGCGCGAAGCACCTCCCGCCGTGGTTTTCTGCACCGCACACGACGAGTTCGCGCTGGATGCTTTCCAGGTCAGCGCTGTCGGTTACCTGGTAA AGCCTGTGCGTCCCGAGCATCTTATCGAGGCGTTGAGGAAGGCCGAGCGGCCCAATCGCGTGCAACTGGCCGCCATGACCCGACCCGCAGCCGAAAGCGG AAATGGCCCGCGGACTCATATCAGTGCGCGTACCCGCAAAGGTATCGAACTGATCCCGTTGGACCAGGTGATCTATTTCATCGCTGACCATAAATACGTG
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| Amino Acid Sequence |
>alginate O-acetyltransferase
MRDHPVKRDTGRAPGKEFFLPELCLPQALLVLVVLAELLVLVLVLVEPMRTGFDWVRLALMSLFVQWIVLLSAALLCGLRPWLARLSPGLAGLLGCLLVV GLTLLCTAVTDVCQLTGRITVGGMVDRYIRYSMIALIMSALMLRYFYLQSQWRKQQQGELQARIESLQARIRPHFLFNTLNSIASLVASNPVKAEQAVLD LSDLFRASLAKPGSLVTWSEELALAKRYLSIEQYRLGERLQLDWRVSAIPDDLPIPQLTLQPLLENALIYGIAPRVEGGVVTVEADYREGEFILRVSNPY EEVATRQTSNGTQQALTNIGARITALFGPYASLSVERRDGRHYTCLRYPCARLTQEARAI
BLASTP |
DIAMOND BLASTP (DIAMOND is faster than BLASTP)
Search for conserved domains in this protein at NCBI CDD site
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