Pseudomonas viridiflava LMCA8, RT94_RS02585

Cytoplasmic
Cytoplasmic Membrane
Periplasmic
Outer Membrane
Extracellular
Unknown

Sequence Data

Strain Pseudomonas viridiflava strain LMCA8 contig_7, whole genome shotgun sequence. [Details]
DNA Sequence Upstream of Gene
CAGGCGCAGGCAGTCGAGGCTGACGTCGCTGGCAGCCCGCTCGGTCGCCACGGCCAGGCTGTGCAACAGGCCGGAAACCTCTTTCAGGTACTGCTCACCC ACCGGCGTCAGGGTGACGCCGCGTGCCGCCCGTACGAACAGTTGCCGTCCGATCATCGCTTCCAGCTTGGCCAGTTGATGGCTGACTGCCGACGGTGTCA GGTCCAGCACTTCGGCGGCGCGGGCCAGGTTGCCGAAGCGGGCCGTCTGCTCGAAGGCCTGAATGGCTTTCAGGGGTGGCAGGTTCGAGTGGGGGTCGTC ATCGGCACGCATGGTGGCTCCGAAGCATCAGGAAGATTGGGCTTTGGGCATTCAAGCACTGCTCGGCTGAAATGACGAGAGGTGAATTTTTTTCATCGAC CAGTGAGGGTAGCGTTATTGCTCGCAGGCAGTACCGGGAACACTCTGAGCCCATCGATCACTTGAATCGAACCCATAAAAACAATCAGAGGACTCCCCTC
DNA Sequence for Gene
>RT94_RS02585
ATGCTGCTTCAAGGCAAAGTTGCAATCATCACCGGTGCTGCCTCCGAACGTGGAATCGGTCGTGCCACCGCTGTCACCTTCGCGCAACACGGCGCTCGCG TCGTGATCCTCGACCTCGATGAAGCCGCCGCACGCGATGCTGCCGCCGCGCTGGGCGAAGGCCATCTGGGCCTGGCCGCCAACGTGGCCGACGAATCACA GGTCAAACAGGCCGTTGCGAAGATCATCGAGCACTTCGGCCGTATCGACATACTGGTCAACAACGCCGGTATCACCCAACCGATCAAGACACTGGATATC CGCCCGGGCGATTACGACAAGGTGCTGGACGTCAGCCTGCGCGGCACACTGTTGATGTCGCAGGCGGTCATTCCGACCATGCGCGCGCAGGGTTCGGGCA GCATCGTGTGCATGTCGTCGGTCTCGGCGCAGCGTGGCGGCGGCATCTTCGGCGGCCCGCATTACAGCGCTGCAAAAGCCGGCGTACTCGGCCTGGGCAA GGCCATGGCGCGGGAGTTCGGCCCGGACCAGATTCGTATCAACTCCATCGCACCGGGCCTGATTCATACCGATATCACCGGCGGGCTGATGCAGGACGAG CGACGCCACGCGATCATCGAAGGCATCCCGCTGGGTCGCCTGGGCGCGGCTCAGGACGTGGCCAATGCGGCGCTGTTTCTGGCCTGTGACCTGTCTTCCT ACCTGACCGGCGTTACGCTGGATGTGAACGGCGGCATGCTGATTCACTGA
BLASTN Search  |  DIAMOND BLASTX Search (DIAMOND is faster than BLASTX)
DNA Sequence Downstream of Gene
CAGCCCATCGGCGGGCCGGTCAGACAGTGTGACGGCCCGTATTTGCTCTGGATCGATGACACGCCCGGCCGGTTTGCCTGGCGGTCTATAAAAACAAGAG ATCAGACCATCATGATAACCACGATGCCCCTCGACGCGGTCTCGACCGCCCGTGCCAATGCCTACCGCAAGACCGCCTGGCGGTTGATGCCGTTCCTGAT GCTGTGCTACCTGTGCGCCTATCTGGACCGGGTCAATGTCGGGTTCGCCAAGCTGACCATGATGAATGACCTGGCCTTCAGCGAAGCCGTCTACGGCCTC GGCGCCGGCATGTTCTTCATCGGTTATTTCCTCTGTGAAGTGCCCAGTAACCTGATTCTGCATCGCGTCGGCGCACGCCGCTGGATCGCGCGCATCATGA TTTCCTGGGGCATCATTTCCGCCCTGTTCGCCTTCGTCGAAACCGAATGGCAGTTCTACGCCCTGCGCTTTCTGCTCGGTGTGGCAGAAGCCGGTCTGGC
Amino Acid Sequence
>short-chain dehydrogenase
MLLQGKVAIITGAASERGIGRATAVTFAQHGARVVILDLDEAAARDAAAALGEGHLGLAANVADESQVKQAVAKIIEHFGRIDILVNNAGITQPIKTLDI RPGDYDKVLDVSLRGTLLMSQAVIPTMRAQGSGSIVCMSSVSAQRGGGIFGGPHYSAAKAGVLGLGKAMAREFGPDQIRINSIAPGLIHTDITGGLMQDE RRHAIIEGIPLGRLGAAQDVANAALFLACDLSSYLTGVTLDVNGGMLIH
BLASTP | DIAMOND BLASTP (DIAMOND is faster than BLASTP)
Search for conserved domains in this protein at NCBI CDD site