Pseudomonas viridiflava LMCA8, RT94_RS02495

Cytoplasmic
Cytoplasmic Membrane
Periplasmic
Outer Membrane
Extracellular
Unknown

Gene Ontology

Ontology Accession Term GO Evidence Evidence Ontology (ECO) Code Reference Comments
Molecular Function GO:0008495 protoheme IX farnesyltransferase activity
ISM
Inferred from Sequence Model
Term mapped from: InterPro:TIGR01473
 ECO:0000259
match to InterPro signature evidence used in automatic assertion
Cellular Component GO:0016020 membrane
ISM
Inferred from Sequence Model
Term mapped from: InterPro:PF01040
 ECO:0000259
match to InterPro signature evidence used in automatic assertion
Biological Process GO:0006783 heme biosynthetic process
ISM
Inferred from Sequence Model
Term mapped from: InterPro:TIGR01473
 ECO:0000259
match to InterPro signature evidence used in automatic assertion
Molecular Function GO:0016765 transferase activity, transferring alkyl or aryl (other than methyl) groups
ISM
Inferred from Sequence Model
Term mapped from: InterPro:PF01040
 ECO:0000259
match to InterPro signature evidence used in automatic assertion

Functional Classifications Manually Assigned by PseudoCAP

Functional Predictions from Interpro

Analysis Accession Description Interpro Accession Interpro Description Amino Acid Start Amino Acid Stop E-value
Hamap MF_00154 Protoheme IX farnesyltransferase [cyoE]. IPR006369 Protohaem IX farnesyltransferase 2 284 17.606945
NCBIfam TIGR01473 JCVI: heme o synthase IPR006369 Protohaem IX farnesyltransferase 4 282 6.0E-91
Pfam PF01040 UbiA prenyltransferase family IPR000537 UbiA prenyltransferase family 19 268 3.0E-58
FunFam G3DSA:1.10.357.140:FF:000001 Protoheme IX farnesyltransferase - - 10 164 3.7E-59
Gene3D G3DSA:1.10.357.140 UbiA prenyltransferase IPR044878 UbiA prenyltransferase superfamily 14 168 2.5E-32
PANTHER PTHR43448 PROTOHEME IX FARNESYLTRANSFERASE, MITOCHONDRIAL IPR006369 Protohaem IX farnesyltransferase 4 282 8.2E-67
CDD cd13957 PT_UbiA_Cox10 IPR006369 Protohaem IX farnesyltransferase 7 278 2.09582E-111

Search for additional functional domains at the NCBI CDD database website. Go to this protein's amino acid sequence and follow the link.